Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20340 and BWI76_RS20345 are separated by 291 nucleotides BWI76_RS20345 and BWI76_RS20350 are separated by 136 nucleotides BWI76_RS20350 and BWI76_RS20355 are separated by 33 nucleotides BWI76_RS20355 and BWI76_RS20360 are separated by 199 nucleotides
BWI76_RS20340: BWI76_RS20340 - histidine ABC transporter substrate-binding protein HisJ, at 4,258,059 to 4,258,841
_RS20340
BWI76_RS20345: BWI76_RS20345 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,259,133 to 4,259,702
_RS20345
BWI76_RS20350: BWI76_RS20350 - amidophosphoribosyltransferase, at 4,259,839 to 4,261,356
_RS20350
BWI76_RS20355: BWI76_RS20355 - colicin V production protein, at 4,261,390 to 4,261,878
_RS20355
BWI76_RS20360: BWI76_RS20360 - cell division protein DedD, at 4,262,078 to 4,262,767
_RS20360
Position (kb) 4259
4260
4261
4262 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4258.848 kb on + strand at 4259.966 kb on + strand at 4259.966 kb on + strand at 4260.090 kb on + strand, within BWI76_RS20350 at 4260.225 kb on + strand, within BWI76_RS20350 at 4260.314 kb on - strand, within BWI76_RS20350 at 4260.658 kb on + strand, within BWI76_RS20350 at 4260.664 kb on - strand, within BWI76_RS20350 at 4261.070 kb on - strand, within BWI76_RS20350 at 4261.323 kb on + strand at 4261.470 kb on + strand, within BWI76_RS20355 at 4261.551 kb on - strand, within BWI76_RS20355 at 4261.570 kb on + strand, within BWI76_RS20355 at 4262.158 kb on + strand, within BWI76_RS20360
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,258,848 + +0.1 4,259,966 + -2.9 4,259,966 + -4.0 4,260,090 + BWI76_RS20350 0.17 -5.4 4,260,225 + BWI76_RS20350 0.25 -4.4 4,260,314 - BWI76_RS20350 0.31 -4.8 4,260,658 + BWI76_RS20350 0.54 -4.4 4,260,664 - BWI76_RS20350 0.54 -5.2 4,261,070 - BWI76_RS20350 0.81 -3.9 4,261,323 + -0.7 4,261,470 + BWI76_RS20355 0.16 -5.2 4,261,551 - BWI76_RS20355 0.33 -1.7 4,261,570 + BWI76_RS20355 0.37 -2.5 4,262,158 + BWI76_RS20360 0.12 -2.8
Or see this region's nucleotide sequence