Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19530 and BWI76_RS19535 are separated by 155 nucleotides BWI76_RS19535 and BWI76_RS19540 are separated by 105 nucleotides BWI76_RS19540 and BWI76_RS19545 are separated by 119 nucleotides BWI76_RS19545 and BWI76_RS19550 are separated by 96 nucleotides
BWI76_RS19530: BWI76_RS19530 - YIP1 family protein, at 4,082,420 to 4,083,007
_RS19530
BWI76_RS19535: BWI76_RS19535 - putative integral membrane protein, at 4,083,163 to 4,083,732
_RS19535
BWI76_RS19540: BWI76_RS19540 - multidrug transporter permease, at 4,083,838 to 4,085,280
_RS19540
BWI76_RS19545: BWI76_RS19545 - type 11 methyltransferase, at 4,085,400 to 4,086,134
_RS19545
BWI76_RS19550: BWI76_RS19550 - phospho-cellobiase, at 4,086,231 to 4,087,625
_RS19550
Position (kb) 4083
4084
4085
4086 Strain fitness (log2 ratio) -1
0
1
2 at 4082.925 kb on - strand, within BWI76_RS19530 at 4083.031 kb on + strand at 4083.039 kb on - strand at 4083.120 kb on + strand at 4083.254 kb on - strand, within BWI76_RS19535 at 4083.273 kb on - strand, within BWI76_RS19535 at 4083.432 kb on - strand, within BWI76_RS19535 at 4083.767 kb on - strand at 4083.860 kb on + strand at 4084.216 kb on + strand, within BWI76_RS19540 at 4084.613 kb on + strand, within BWI76_RS19540 at 4084.636 kb on - strand, within BWI76_RS19540 at 4084.755 kb on - strand, within BWI76_RS19540 at 4085.061 kb on - strand, within BWI76_RS19540
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,082,925 - BWI76_RS19530 0.86 +2.5 4,083,031 + +0.9 4,083,039 - +1.2 4,083,120 + +0.1 4,083,254 - BWI76_RS19535 0.16 +1.2 4,083,273 - BWI76_RS19535 0.19 -0.9 4,083,432 - BWI76_RS19535 0.47 -0.2 4,083,767 - +1.3 4,083,860 + +0.0 4,084,216 + BWI76_RS19540 0.26 -0.3 4,084,613 + BWI76_RS19540 0.54 +0.5 4,084,636 - BWI76_RS19540 0.55 +0.2 4,084,755 - BWI76_RS19540 0.64 +0.5 4,085,061 - BWI76_RS19540 0.85 +0.2
Or see this region's nucleotide sequence