Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18650 and BWI76_RS18655 are separated by 46 nucleotides BWI76_RS18655 and BWI76_RS18660 are separated by 75 nucleotides BWI76_RS18660 and BWI76_RS18665 are separated by 10 nucleotides BWI76_RS18665 and BWI76_RS18670 are separated by 12 nucleotides
BWI76_RS18650: BWI76_RS18650 - fimbrial protein, at 3,866,162 to 3,866,698
_RS18650
BWI76_RS18655: BWI76_RS18655 - chaperone FimC, periplasmic, at 3,866,745 to 3,867,455
_RS18655
BWI76_RS18660: BWI76_RS18660 - hypothetical protein, at 3,867,531 to 3,870,158
_RS18660
BWI76_RS18665: BWI76_RS18665 - hypothetical protein, at 3,870,169 to 3,870,696
_RS18665
BWI76_RS18670: BWI76_RS18670 - hypothetical protein, at 3,870,709 to 3,871,212
_RS18670
Position (kb) 3867
3868
3869
3870
3871 Strain fitness (log2 ratio) -2
-1
0
1 at 3866.552 kb on - strand, within BWI76_RS18650 at 3866.849 kb on + strand, within BWI76_RS18655 at 3867.285 kb on - strand, within BWI76_RS18655 at 3867.421 kb on + strand at 3867.473 kb on + strand at 3867.474 kb on + strand at 3867.512 kb on + strand at 3867.580 kb on - strand at 3867.653 kb on + strand at 3868.840 kb on + strand, within BWI76_RS18660 at 3868.850 kb on + strand, within BWI76_RS18660 at 3868.855 kb on + strand, within BWI76_RS18660 at 3869.287 kb on + strand, within BWI76_RS18660 at 3869.432 kb on + strand, within BWI76_RS18660 at 3869.555 kb on - strand, within BWI76_RS18660 at 3869.622 kb on + strand, within BWI76_RS18660 at 3869.654 kb on - strand, within BWI76_RS18660 at 3869.859 kb on - strand, within BWI76_RS18660 at 3869.908 kb on - strand at 3870.140 kb on + strand at 3870.808 kb on + strand, within BWI76_RS18670 at 3870.872 kb on + strand, within BWI76_RS18670 at 3871.055 kb on + strand, within BWI76_RS18670
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,866,552 - BWI76_RS18650 0.73 +1.1 3,866,849 + BWI76_RS18655 0.15 +0.6 3,867,285 - BWI76_RS18655 0.76 +0.9 3,867,421 + +1.0 3,867,473 + +1.3 3,867,474 + +1.6 3,867,512 + -0.2 3,867,580 - +1.0 3,867,653 + -1.3 3,868,840 + BWI76_RS18660 0.50 -0.0 3,868,850 + BWI76_RS18660 0.50 +0.8 3,868,855 + BWI76_RS18660 0.50 -2.0 3,869,287 + BWI76_RS18660 0.67 -0.8 3,869,432 + BWI76_RS18660 0.72 -0.6 3,869,555 - BWI76_RS18660 0.77 -0.4 3,869,622 + BWI76_RS18660 0.80 -1.0 3,869,654 - BWI76_RS18660 0.81 +0.1 3,869,859 - BWI76_RS18660 0.89 +0.1 3,869,908 - +0.1 3,870,140 + +0.4 3,870,808 + BWI76_RS18670 0.20 +1.2 3,870,872 + BWI76_RS18670 0.32 -0.2 3,871,055 + BWI76_RS18670 0.69 +0.6
Or see this region's nucleotide sequence