Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17995 and BWI76_RS18000 are separated by 36 nucleotides BWI76_RS18000 and BWI76_RS18005 are separated by 115 nucleotides BWI76_RS18005 and BWI76_RS18010 are separated by 97 nucleotides BWI76_RS18010 and BWI76_RS18015 overlap by 4 nucleotides
BWI76_RS17995: BWI76_RS17995 - hypothetical protein, at 3,738,772 to 3,741,405
_RS17995
BWI76_RS18000: BWI76_RS18000 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 3,741,442 to 3,742,917
_RS18000
BWI76_RS18005: BWI76_RS18005 - hypothetical protein, at 3,743,033 to 3,743,272
_RS18005
BWI76_RS18010: BWI76_RS18010 - hypothetical protein, at 3,743,370 to 3,743,561
_RS18010
BWI76_RS18015: BWI76_RS18015 - serine/threonine-protein phosphatase, at 3,743,558 to 3,744,211
_RS18015
Position (kb) 3741
3742
3743 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3740.719 kb on + strand, within BWI76_RS17995 at 3740.760 kb on - strand, within BWI76_RS17995 at 3740.816 kb on + strand at 3740.954 kb on - strand, within BWI76_RS17995 at 3741.265 kb on - strand at 3741.700 kb on - strand, within BWI76_RS18000 at 3742.331 kb on - strand, within BWI76_RS18000 at 3742.387 kb on + strand, within BWI76_RS18000 at 3742.530 kb on + strand, within BWI76_RS18000 at 3742.744 kb on + strand, within BWI76_RS18000 at 3742.801 kb on + strand at 3743.072 kb on + strand, within BWI76_RS18005 at 3743.084 kb on - strand, within BWI76_RS18005 at 3743.084 kb on - strand, within BWI76_RS18005 at 3743.096 kb on + strand, within BWI76_RS18005 at 3743.201 kb on + strand, within BWI76_RS18005 at 3743.336 kb on - strand at 3743.336 kb on - strand at 3743.385 kb on - strand at 3743.659 kb on + strand, within BWI76_RS18015 at 3743.766 kb on - strand, within BWI76_RS18015 at 3743.819 kb on + strand, within BWI76_RS18015 at 3743.829 kb on - strand, within BWI76_RS18015
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,740,719 + BWI76_RS17995 0.74 +0.4 3,740,760 - BWI76_RS17995 0.75 +1.3 3,740,816 + +3.1 3,740,954 - BWI76_RS17995 0.83 -2.0 3,741,265 - -0.0 3,741,700 - BWI76_RS18000 0.17 -2.7 3,742,331 - BWI76_RS18000 0.60 -2.4 3,742,387 + BWI76_RS18000 0.64 -0.0 3,742,530 + BWI76_RS18000 0.74 -2.0 3,742,744 + BWI76_RS18000 0.88 -0.8 3,742,801 + -0.3 3,743,072 + BWI76_RS18005 0.16 -0.1 3,743,084 - BWI76_RS18005 0.21 +1.0 3,743,084 - BWI76_RS18005 0.21 +0.9 3,743,096 + BWI76_RS18005 0.26 -0.6 3,743,201 + BWI76_RS18005 0.70 -0.2 3,743,336 - +0.4 3,743,336 - -0.5 3,743,385 - +0.2 3,743,659 + BWI76_RS18015 0.15 -1.6 3,743,766 - BWI76_RS18015 0.32 +0.4 3,743,819 + BWI76_RS18015 0.40 +0.7 3,743,829 - BWI76_RS18015 0.41 +1.8
Or see this region's nucleotide sequence