Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16735

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16730 and BWI76_RS16735 are separated by 809 nucleotidesBWI76_RS16735 and BWI76_RS16740 are separated by 48 nucleotides BWI76_RS16730: BWI76_RS16730 - cystathionine gamma-lyase, at 3,465,235 to 3,466,422 _RS16730 BWI76_RS16735: BWI76_RS16735 - cold-shock protein, at 3,467,232 to 3,467,444 _RS16735 BWI76_RS16740: BWI76_RS16740 - transcriptional regulator, at 3,467,493 to 3,468,365 _RS16740 Position (kb) 3467 3468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3466.233 kb on + strand, within BWI76_RS16730at 3466.240 kb on + strand, within BWI76_RS16730at 3466.247 kb on + strand, within BWI76_RS16730at 3466.247 kb on + strand, within BWI76_RS16730at 3466.255 kb on + strand, within BWI76_RS16730at 3466.255 kb on - strand, within BWI76_RS16730at 3466.255 kb on - strand, within BWI76_RS16730at 3466.255 kb on - strand, within BWI76_RS16730at 3466.259 kb on + strand, within BWI76_RS16730at 3466.267 kb on - strand, within BWI76_RS16730at 3466.269 kb on + strand, within BWI76_RS16730at 3466.292 kb on + strand, within BWI76_RS16730at 3466.292 kb on + strand, within BWI76_RS16730at 3466.292 kb on + strand, within BWI76_RS16730at 3466.485 kb on - strandat 3466.498 kb on - strandat 3466.569 kb on - strandat 3466.757 kb on + strandat 3466.763 kb on + strandat 3466.776 kb on - strandat 3466.791 kb on + strandat 3466.799 kb on - strandat 3466.819 kb on + strandat 3466.837 kb on - strandat 3466.853 kb on + strandat 3466.861 kb on + strandat 3466.861 kb on + strandat 3466.869 kb on + strandat 3466.945 kb on + strandat 3466.947 kb on + strandat 3466.963 kb on - strandat 3466.963 kb on - strandat 3466.963 kb on - strandat 3466.964 kb on + strandat 3466.964 kb on + strandat 3466.965 kb on - strandat 3466.969 kb on + strandat 3466.969 kb on + strandat 3466.969 kb on + strandat 3466.972 kb on - strandat 3466.977 kb on - strandat 3467.021 kb on + strandat 3467.029 kb on - strandat 3467.031 kb on - strandat 3467.073 kb on + strandat 3467.080 kb on - strandat 3467.184 kb on - strandat 3467.191 kb on + strandat 3467.199 kb on - strandat 3467.199 kb on - strandat 3467.199 kb on - strandat 3467.201 kb on - strandat 3467.201 kb on - strandat 3467.286 kb on + strand, within BWI76_RS16735at 3467.366 kb on - strand, within BWI76_RS16735at 3467.368 kb on + strand, within BWI76_RS16735at 3467.404 kb on - strand, within BWI76_RS16735at 3467.406 kb on + strand, within BWI76_RS16735at 3467.542 kb on - strandat 3467.583 kb on - strand, within BWI76_RS16740at 3467.764 kb on - strand, within BWI76_RS16740at 3468.038 kb on + strand, within BWI76_RS16740at 3468.038 kb on + strand, within BWI76_RS16740at 3468.205 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
3,466,233 + BWI76_RS16730 0.84 -1.0
3,466,240 + BWI76_RS16730 0.85 -1.6
3,466,247 + BWI76_RS16730 0.85 +0.3
3,466,247 + BWI76_RS16730 0.85 +0.6
3,466,255 + BWI76_RS16730 0.86 -2.9
3,466,255 - BWI76_RS16730 0.86 -1.0
3,466,255 - BWI76_RS16730 0.86 +1.0
3,466,255 - BWI76_RS16730 0.86 +1.0
3,466,259 + BWI76_RS16730 0.86 -1.7
3,466,267 - BWI76_RS16730 0.87 +0.0
3,466,269 + BWI76_RS16730 0.87 +0.7
3,466,292 + BWI76_RS16730 0.89 +1.5
3,466,292 + BWI76_RS16730 0.89 -0.0
3,466,292 + BWI76_RS16730 0.89 +0.7
3,466,485 - +1.5
3,466,498 - +1.0
3,466,569 - -0.4
3,466,757 + -0.4
3,466,763 + -1.8
3,466,776 - +2.1
3,466,791 + -0.6
3,466,799 - -1.6
3,466,819 + +1.0
3,466,837 - +0.7
3,466,853 + +1.7
3,466,861 + -1.2
3,466,861 + -1.3
3,466,869 + +0.1
3,466,945 + +1.5
3,466,947 + -0.3
3,466,963 - +1.7
3,466,963 - -0.6
3,466,963 - -0.7
3,466,964 + -1.2
3,466,964 + -0.5
3,466,965 - +1.0
3,466,969 + -0.1
3,466,969 + +1.5
3,466,969 + -1.6
3,466,972 - +0.7
3,466,977 - +0.6
3,467,021 + +0.7
3,467,029 - +2.0
3,467,031 - -0.0
3,467,073 + -0.8
3,467,080 - -1.8
3,467,184 - -0.3
3,467,191 + +0.5
3,467,199 - +0.8
3,467,199 - -3.7
3,467,199 - -0.9
3,467,201 - -3.2
3,467,201 - -1.0
3,467,286 + BWI76_RS16735 0.25 +0.3
3,467,366 - BWI76_RS16735 0.63 +3.5
3,467,368 + BWI76_RS16735 0.64 +0.7
3,467,404 - BWI76_RS16735 0.81 -0.2
3,467,406 + BWI76_RS16735 0.82 +0.8
3,467,542 - +0.8
3,467,583 - BWI76_RS16740 0.10 -1.4
3,467,764 - BWI76_RS16740 0.31 -0.2
3,468,038 + BWI76_RS16740 0.62 +0.5
3,468,038 + BWI76_RS16740 0.62 +0.9
3,468,205 - +0.4

Or see this region's nucleotide sequence