Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16520 and BWI76_RS16525 are separated by 298 nucleotides BWI76_RS16525 and BWI76_RS16530 are separated by 31 nucleotides BWI76_RS16530 and BWI76_RS16535 are separated by 230 nucleotides
BWI76_RS16520: BWI76_RS16520 - Bcr/CflA family multidrug efflux MFS transporter, at 3,424,569 to 3,425,753
_RS16520
BWI76_RS16525: BWI76_RS16525 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,426,052 to 3,427,203
_RS16525
BWI76_RS16530: BWI76_RS16530 - riboflavin synthase subunit alpha, at 3,427,235 to 3,427,876
_RS16530
BWI76_RS16535: BWI76_RS16535 - MATE family efflux transporter, at 3,428,107 to 3,429,480
_RS16535
Position (kb)
3426
3427
3428 Strain fitness (log2 ratio)
-2
-1
0
1 at 3425.116 kb on - strand, within BWI76_RS16520 at 3425.209 kb on - strand, within BWI76_RS16520 at 3425.305 kb on - strand, within BWI76_RS16520 at 3425.341 kb on - strand, within BWI76_RS16520 at 3425.439 kb on + strand, within BWI76_RS16520 at 3425.672 kb on + strand at 3425.711 kb on + strand at 3425.711 kb on + strand at 3425.747 kb on + strand at 3425.937 kb on + strand at 3426.013 kb on + strand at 3426.013 kb on + strand at 3426.214 kb on + strand, within BWI76_RS16525 at 3426.658 kb on - strand, within BWI76_RS16525 at 3426.928 kb on - strand, within BWI76_RS16525 at 3427.025 kb on + strand, within BWI76_RS16525 at 3427.174 kb on + strand at 3427.186 kb on - strand at 3427.999 kb on + strand at 3428.019 kb on - strand at 3428.091 kb on + strand at 3428.091 kb on + strand at 3428.148 kb on + strand at 3428.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 3,425,116 - BWI76_RS16520 0.46 -0.1 3,425,209 - BWI76_RS16520 0.54 +0.0 3,425,305 - BWI76_RS16520 0.62 +0.6 3,425,341 - BWI76_RS16520 0.65 +0.4 3,425,439 + BWI76_RS16520 0.73 -2.5 3,425,672 + +0.1 3,425,711 + -2.1 3,425,711 + +0.3 3,425,747 + -0.1 3,425,937 + -0.7 3,426,013 + -2.7 3,426,013 + -1.6 3,426,214 + BWI76_RS16525 0.14 +0.2 3,426,658 - BWI76_RS16525 0.53 +0.0 3,426,928 - BWI76_RS16525 0.76 +1.5 3,427,025 + BWI76_RS16525 0.84 +1.1 3,427,174 + -1.9 3,427,186 - -1.3 3,427,999 + -2.4 3,428,019 - +1.7 3,428,091 + +1.7 3,428,091 + +0.4 3,428,148 + -1.3 3,428,176 + +0.3
Or see this region's nucleotide sequence