Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15965

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15960 and BWI76_RS15965 are separated by 118 nucleotidesBWI76_RS15965 and BWI76_RS15970 are separated by 419 nucleotides BWI76_RS15960: BWI76_RS15960 - LysR family transcriptional regulator, at 3,310,396 to 3,311,289 _RS15960 BWI76_RS15965: BWI76_RS15965 - MFS transporter, at 3,311,408 to 3,312,658 _RS15965 BWI76_RS15970: BWI76_RS15970 - carboxypeptidase M32, at 3,313,078 to 3,314,565 _RS15970 Position (kb) 3311 3312 3313Strain fitness (log2 ratio) -3 -2 -1 0 1at 3310.856 kb on - strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.923 kb on + strand, within BWI76_RS15960at 3311.214 kb on - strandat 3311.239 kb on + strandat 3311.387 kb on - strandat 3311.568 kb on - strand, within BWI76_RS15965at 3311.623 kb on + strand, within BWI76_RS15965at 3312.025 kb on + strand, within BWI76_RS15965at 3312.323 kb on + strandat 3312.842 kb on - strandat 3313.022 kb on + strandat 3313.144 kb on - strandat 3313.493 kb on - strand, within BWI76_RS15970

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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3,310,856 - BWI76_RS15960 0.51 -0.8
3,310,865 + BWI76_RS15960 0.52 -1.9
3,310,865 + BWI76_RS15960 0.52 -2.2
3,310,923 + BWI76_RS15960 0.59 -1.7
3,311,214 - -0.4
3,311,239 + -1.4
3,311,387 - -1.4
3,311,568 - BWI76_RS15965 0.13 -3.0
3,311,623 + BWI76_RS15965 0.17 -2.7
3,312,025 + BWI76_RS15965 0.49 -2.6
3,312,323 + +0.2
3,312,842 - -0.8
3,313,022 + +0.4
3,313,144 - +0.2
3,313,493 - BWI76_RS15970 0.28 -0.2

Or see this region's nucleotide sequence