Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13485

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13475 and BWI76_RS13480 are separated by 276 nucleotidesBWI76_RS13480 and BWI76_RS13485 are separated by 65 nucleotidesBWI76_RS13485 and BWI76_RS13490 are separated by 44 nucleotides BWI76_RS13475: BWI76_RS13475 - N-acetyltransferase, at 2,809,487 to 2,810,005 _RS13475 BWI76_RS13480: BWI76_RS13480 - XRE family transcriptional regulator, at 2,810,282 to 2,810,857 _RS13480 BWI76_RS13485: BWI76_RS13485 - NADP-dependent oxidoreductase, at 2,810,923 to 2,811,960 _RS13485 BWI76_RS13490: BWI76_RS13490 - pyrimidine-specific ribonucleoside hydrolase RihA, at 2,812,005 to 2,812,940 _RS13490 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -2 -1 0 1 2at 2810.105 kb on + strandat 2810.768 kb on - strand, within BWI76_RS13480at 2811.278 kb on + strand, within BWI76_RS13485at 2811.343 kb on - strand, within BWI76_RS13485at 2811.413 kb on - strand, within BWI76_RS13485at 2811.521 kb on - strand, within BWI76_RS13485at 2812.117 kb on + strand, within BWI76_RS13490at 2812.202 kb on + strand, within BWI76_RS13490at 2812.303 kb on + strand, within BWI76_RS13490at 2812.370 kb on + strand, within BWI76_RS13490at 2812.768 kb on + strand, within BWI76_RS13490at 2812.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,810,105 + +0.6
2,810,768 - BWI76_RS13480 0.84 +1.6
2,811,278 + BWI76_RS13485 0.34 -0.4
2,811,343 - BWI76_RS13485 0.40 -0.8
2,811,413 - BWI76_RS13485 0.47 -0.6
2,811,521 - BWI76_RS13485 0.58 -1.0
2,812,117 + BWI76_RS13490 0.12 +1.8
2,812,202 + BWI76_RS13490 0.21 -1.4
2,812,303 + BWI76_RS13490 0.32 +0.6
2,812,370 + BWI76_RS13490 0.39 -0.6
2,812,768 + BWI76_RS13490 0.82 -2.2
2,812,864 + +0.1

Or see this region's nucleotide sequence