Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09790

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09780 and BWI76_RS09785 are separated by 150 nucleotidesBWI76_RS09785 and BWI76_RS09790 are separated by 215 nucleotidesBWI76_RS09790 and BWI76_RS09795 are separated by 45 nucleotides BWI76_RS09780: BWI76_RS09780 - 30S ribosomal protein S1, at 2,050,507 to 2,052,180 _RS09780 BWI76_RS09785: BWI76_RS09785 - integration host factor subunit beta, at 2,052,331 to 2,052,618 _RS09785 BWI76_RS09790: BWI76_RS09790 - ComEC family protein, at 2,052,834 to 2,055,089 _RS09790 BWI76_RS09795: BWI76_RS09795 - lipid ABC transporter permease/ATP-binding protein, at 2,055,135 to 2,056,883 _RS09795 Position (kb) 2052 2053 2054 2055 2056Strain fitness (log2 ratio) -2 -1 0 1at 2052.284 kb on + strandat 2052.704 kb on - strandat 2052.887 kb on - strandat 2052.918 kb on + strandat 2052.962 kb on + strandat 2053.199 kb on + strand, within BWI76_RS09790at 2053.214 kb on + strand, within BWI76_RS09790at 2053.229 kb on + strand, within BWI76_RS09790at 2053.264 kb on - strand, within BWI76_RS09790at 2053.550 kb on - strand, within BWI76_RS09790at 2053.658 kb on - strand, within BWI76_RS09790at 2053.658 kb on - strand, within BWI76_RS09790at 2053.959 kb on - strand, within BWI76_RS09790at 2054.203 kb on + strand, within BWI76_RS09790at 2054.360 kb on - strand, within BWI76_RS09790at 2054.500 kb on + strand, within BWI76_RS09790at 2054.560 kb on - strand, within BWI76_RS09790at 2054.668 kb on - strand, within BWI76_RS09790at 2054.733 kb on - strand, within BWI76_RS09790at 2054.852 kb on - strand, within BWI76_RS09790at 2054.858 kb on - strand, within BWI76_RS09790at 2054.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,052,284 + -0.9
2,052,704 - -1.6
2,052,887 - +0.5
2,052,918 + -0.1
2,052,962 + -0.5
2,053,199 + BWI76_RS09790 0.16 +0.2
2,053,214 + BWI76_RS09790 0.17 -0.4
2,053,229 + BWI76_RS09790 0.18 +0.1
2,053,264 - BWI76_RS09790 0.19 +0.5
2,053,550 - BWI76_RS09790 0.32 +0.6
2,053,658 - BWI76_RS09790 0.37 -2.4
2,053,658 - BWI76_RS09790 0.37 -0.0
2,053,959 - BWI76_RS09790 0.50 -0.5
2,054,203 + BWI76_RS09790 0.61 +0.0
2,054,360 - BWI76_RS09790 0.68 +0.6
2,054,500 + BWI76_RS09790 0.74 +0.3
2,054,560 - BWI76_RS09790 0.77 +0.1
2,054,668 - BWI76_RS09790 0.81 +0.0
2,054,733 - BWI76_RS09790 0.84 -1.3
2,054,852 - BWI76_RS09790 0.89 -0.3
2,054,858 - BWI76_RS09790 0.90 +1.3
2,054,914 - -0.4

Or see this region's nucleotide sequence