Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08580

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08550 and BWI76_RS08555 are separated by 26 nucleotidesBWI76_RS08555 and BWI76_RS08560 are separated by 3 nucleotidesBWI76_RS08560 and BWI76_RS08565 are separated by 144 nucleotidesBWI76_RS08565 and BWI76_RS08570 are separated by 35 nucleotidesBWI76_RS08570 and BWI76_RS08580 are separated by 456 nucleotidesBWI76_RS08580 and BWI76_RS08585 are separated by 35 nucleotidesBWI76_RS08585 and BWI76_RS08590 overlap by 4 nucleotides BWI76_RS08550: BWI76_RS08550 - tRNA-Lys, at 1,809,293 to 1,809,368 _RS08550 BWI76_RS08555: BWI76_RS08555 - tRNA-Val, at 1,809,395 to 1,809,470 _RS08555 BWI76_RS08560: BWI76_RS08560 - tRNA-Lys, at 1,809,474 to 1,809,549 _RS08560 BWI76_RS08565: BWI76_RS08565 - tRNA-Lys, at 1,809,694 to 1,809,769 _RS08565 BWI76_RS08570: BWI76_RS08570 - tRNA-Lys, at 1,809,805 to 1,809,880 _RS08570 BWI76_RS08580: BWI76_RS08580 - quinolinate synthetase, at 1,810,337 to 1,811,380 _RS08580 BWI76_RS08585: BWI76_RS08585 - nicotinamide riboside transporter PnuC, at 1,811,416 to 1,812,135 _RS08585 BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076 _RS08590 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1809.582 kb on + strandat 1810.013 kb on + strandat 1810.288 kb on - strandat 1810.504 kb on - strand, within BWI76_RS08580at 1810.932 kb on + strand, within BWI76_RS08580at 1811.226 kb on + strand, within BWI76_RS08580at 1811.471 kb on + strandat 1811.481 kb on + strandat 1811.667 kb on - strand, within BWI76_RS08585at 1811.805 kb on - strand, within BWI76_RS08585at 1811.846 kb on + strand, within BWI76_RS08585

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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1,809,582 + -1.3
1,810,013 + +0.5
1,810,288 - -1.4
1,810,504 - BWI76_RS08580 0.16 -4.8
1,810,932 + BWI76_RS08580 0.57 -2.4
1,811,226 + BWI76_RS08580 0.85 -1.9
1,811,471 + +0.3
1,811,481 + +0.7
1,811,667 - BWI76_RS08585 0.35 +1.3
1,811,805 - BWI76_RS08585 0.54 +0.8
1,811,846 + BWI76_RS08585 0.60 -1.1

Or see this region's nucleotide sequence