Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07045

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07040 and BWI76_RS07045 are separated by 315 nucleotidesBWI76_RS07045 and BWI76_RS07050 are separated by 9 nucleotides BWI76_RS07040: BWI76_RS07040 - ureidoglycolate dehydrogenase, at 1,480,311 to 1,481,360 _RS07040 BWI76_RS07045: BWI76_RS07045 - acyl-CoA synthetase FdrA, at 1,481,676 to 1,483,343 _RS07045 BWI76_RS07050: BWI76_RS07050 - putative cytoplasmic protein, at 1,483,353 to 1,484,612 _RS07050 Position (kb) 1481 1482 1483 1484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1480.720 kb on - strand, within BWI76_RS07040at 1480.729 kb on - strand, within BWI76_RS07040at 1480.818 kb on + strand, within BWI76_RS07040at 1480.876 kb on + strand, within BWI76_RS07040at 1480.894 kb on + strand, within BWI76_RS07040at 1480.925 kb on - strand, within BWI76_RS07040at 1480.942 kb on + strand, within BWI76_RS07040at 1480.952 kb on + strand, within BWI76_RS07040at 1481.010 kb on + strand, within BWI76_RS07040at 1481.010 kb on + strand, within BWI76_RS07040at 1481.010 kb on + strand, within BWI76_RS07040at 1481.018 kb on - strand, within BWI76_RS07040at 1481.018 kb on - strand, within BWI76_RS07040at 1481.018 kb on - strand, within BWI76_RS07040at 1481.036 kb on - strand, within BWI76_RS07040at 1481.093 kb on - strand, within BWI76_RS07040at 1481.093 kb on - strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strandat 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.097 kb on + strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.105 kb on - strand, within BWI76_RS07040at 1481.209 kb on - strand, within BWI76_RS07040at 1481.216 kb on - strand, within BWI76_RS07040at 1481.218 kb on - strand, within BWI76_RS07040at 1481.227 kb on - strand, within BWI76_RS07040at 1481.242 kb on - strand, within BWI76_RS07040at 1481.242 kb on - strand, within BWI76_RS07040at 1481.254 kb on + strand, within BWI76_RS07040at 1481.254 kb on + strand, within BWI76_RS07040at 1481.254 kb on + strand, within BWI76_RS07040at 1481.259 kb on + strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.262 kb on - strandat 1481.267 kb on - strandat 1481.272 kb on - strandat 1481.294 kb on + strandat 1481.295 kb on + strandat 1481.300 kb on + strandat 1481.302 kb on - strandat 1481.305 kb on + strandat 1481.305 kb on + strandat 1481.305 kb on + strandat 1481.308 kb on + strandat 1481.308 kb on + strandat 1481.308 kb on - strandat 1481.308 kb on - strandat 1481.308 kb on - strandat 1481.313 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.316 kb on - strandat 1481.323 kb on + strandat 1481.330 kb on - strandat 1481.333 kb on + strandat 1481.339 kb on + strandat 1481.341 kb on + strandat 1481.347 kb on - strandat 1481.361 kb on - strandat 1481.361 kb on - strandat 1481.381 kb on + strandat 1481.381 kb on + strandat 1481.381 kb on + strandat 1481.386 kb on + strandat 1481.389 kb on - strandat 1481.389 kb on - strandat 1481.389 kb on - strandat 1481.389 kb on - strandat 1481.389 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.394 kb on - strandat 1481.509 kb on - strandat 1481.600 kb on + strandat 1481.625 kb on + strandat 1481.625 kb on + strandat 1481.722 kb on + strandat 1481.722 kb on + strandat 1481.743 kb on + strandat 1481.838 kb on + strandat 1481.838 kb on + strandat 1481.846 kb on - strand, within BWI76_RS07045at 1481.863 kb on + strand, within BWI76_RS07045at 1481.882 kb on + strand, within BWI76_RS07045at 1481.936 kb on + strand, within BWI76_RS07045at 1481.941 kb on + strand, within BWI76_RS07045at 1481.944 kb on - strand, within BWI76_RS07045at 1481.952 kb on + strand, within BWI76_RS07045at 1481.952 kb on + strand, within BWI76_RS07045at 1481.960 kb on - strand, within BWI76_RS07045at 1481.960 kb on - strand, within BWI76_RS07045at 1481.960 kb on - strand, within BWI76_RS07045at 1481.960 kb on - strand, within BWI76_RS07045at 1481.967 kb on - strand, within BWI76_RS07045at 1481.971 kb on + strand, within BWI76_RS07045at 1481.971 kb on + strand, within BWI76_RS07045at 1481.977 kb on + strand, within BWI76_RS07045at 1482.072 kb on - strand, within BWI76_RS07045at 1482.197 kb on - strand, within BWI76_RS07045at 1482.590 kb on + strand, within BWI76_RS07045at 1482.645 kb on + strand, within BWI76_RS07045at 1482.734 kb on + strand, within BWI76_RS07045at 1482.775 kb on - strand, within BWI76_RS07045at 1482.853 kb on + strand, within BWI76_RS07045at 1483.151 kb on + strand, within BWI76_RS07045at 1483.159 kb on - strand, within BWI76_RS07045at 1483.222 kb on - strandat 1483.222 kb on - strandat 1483.224 kb on + strandat 1483.381 kb on - strandat 1483.478 kb on + strandat 1483.517 kb on - strand, within BWI76_RS07050at 1483.523 kb on + strand, within BWI76_RS07050at 1483.523 kb on + strand, within BWI76_RS07050at 1483.615 kb on + strand, within BWI76_RS07050at 1483.623 kb on - strand, within BWI76_RS07050at 1483.709 kb on + strand, within BWI76_RS07050at 1483.889 kb on - strand, within BWI76_RS07050at 1483.924 kb on - strand, within BWI76_RS07050at 1483.930 kb on + strand, within BWI76_RS07050at 1484.028 kb on - strand, within BWI76_RS07050at 1484.054 kb on + strand, within BWI76_RS07050at 1484.115 kb on + strand, within BWI76_RS07050at 1484.194 kb on - strand, within BWI76_RS07050at 1484.211 kb on - strandat 1484.225 kb on - strand, within BWI76_RS07050at 1484.226 kb on - strand, within BWI76_RS07050at 1484.247 kb on - strand, within BWI76_RS07050

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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1,480,720 - BWI76_RS07040 0.39 +0.8
1,480,729 - BWI76_RS07040 0.40 -0.7
1,480,818 + BWI76_RS07040 0.48 +1.6
1,480,876 + BWI76_RS07040 0.54 -1.9
1,480,894 + BWI76_RS07040 0.56 +1.4
1,480,925 - BWI76_RS07040 0.58 -0.3
1,480,942 + BWI76_RS07040 0.60 -1.5
1,480,952 + BWI76_RS07040 0.61 -0.2
1,481,010 + BWI76_RS07040 0.67 -1.4
1,481,010 + BWI76_RS07040 0.67 -0.2
1,481,010 + BWI76_RS07040 0.67 +0.3
1,481,018 - BWI76_RS07040 0.67 -0.4
1,481,018 - BWI76_RS07040 0.67 +0.5
1,481,018 - BWI76_RS07040 0.67 +1.2
1,481,036 - BWI76_RS07040 0.69 +0.9
1,481,093 - BWI76_RS07040 0.74 +0.8
1,481,093 - BWI76_RS07040 0.74 -0.1
1,481,097 + BWI76_RS07040 0.75 -2.8
1,481,097 + BWI76_RS07040 0.75 +0.2
1,481,097 + BWI76_RS07040 0.75 -1.1
1,481,097 + BWI76_RS07040 0.75 +0.2
1,481,097 + +1.1
1,481,097 + BWI76_RS07040 0.75 +0.2
1,481,097 + BWI76_RS07040 0.75 +0.6
1,481,097 + BWI76_RS07040 0.75 +0.9
1,481,097 + BWI76_RS07040 0.75 +0.1
1,481,105 - BWI76_RS07040 0.76 -0.0
1,481,105 - BWI76_RS07040 0.76 -0.3
1,481,105 - BWI76_RS07040 0.76 -3.4
1,481,105 - BWI76_RS07040 0.76 -0.5
1,481,105 - BWI76_RS07040 0.76 +1.7
1,481,105 - BWI76_RS07040 0.76 -1.7
1,481,105 - BWI76_RS07040 0.76 -0.7
1,481,209 - BWI76_RS07040 0.86 -1.1
1,481,216 - BWI76_RS07040 0.86 -0.2
1,481,218 - BWI76_RS07040 0.86 -1.4
1,481,227 - BWI76_RS07040 0.87 -2.1
1,481,242 - BWI76_RS07040 0.89 -1.3
1,481,242 - BWI76_RS07040 0.89 +0.6
1,481,254 + BWI76_RS07040 0.90 -1.2
1,481,254 + BWI76_RS07040 0.90 +1.9
1,481,254 + BWI76_RS07040 0.90 +3.5
1,481,259 + +0.7
1,481,262 - +0.9
1,481,262 - -0.7
1,481,262 - +0.3
1,481,262 - -1.4
1,481,262 - +0.4
1,481,262 - +0.7
1,481,262 - +0.2
1,481,262 - -0.4
1,481,267 - -0.7
1,481,272 - -2.3
1,481,294 + +1.4
1,481,295 + -0.7
1,481,300 + -1.4
1,481,302 - -1.4
1,481,305 + -0.1
1,481,305 + +1.1
1,481,305 + +0.6
1,481,308 + -3.4
1,481,308 + +0.2
1,481,308 - +0.1
1,481,308 - +1.7
1,481,308 - +0.9
1,481,313 - -1.7
1,481,316 - +0.7
1,481,316 - -0.3
1,481,316 - -0.9
1,481,316 - -0.1
1,481,316 - +2.1
1,481,316 - -2.2
1,481,323 + -4.1
1,481,330 - -3.4
1,481,333 + -2.4
1,481,339 + +0.4
1,481,341 + -0.7
1,481,347 - -0.4
1,481,361 - -2.4
1,481,361 - -0.9
1,481,381 + -0.7
1,481,381 + -1.6
1,481,381 + -1.2
1,481,386 + -1.8
1,481,389 - -0.9
1,481,389 - -3.3
1,481,389 - -0.1
1,481,389 - -3.1
1,481,389 - +0.4
1,481,394 - +0.4
1,481,394 - -0.3
1,481,394 - +0.7
1,481,394 - +0.9
1,481,394 - -2.4
1,481,394 - -1.9
1,481,394 - -0.4
1,481,509 - -1.1
1,481,600 + +0.1
1,481,625 + +0.4
1,481,625 + -1.1
1,481,722 + -0.6
1,481,722 + -3.1
1,481,743 + +0.9
1,481,838 + +1.5
1,481,838 + -1.4
1,481,846 - BWI76_RS07045 0.10 -1.8
1,481,863 + BWI76_RS07045 0.11 -2.7
1,481,882 + BWI76_RS07045 0.12 -0.7
1,481,936 + BWI76_RS07045 0.16 +0.3
1,481,941 + BWI76_RS07045 0.16 -1.9
1,481,944 - BWI76_RS07045 0.16 +0.2
1,481,952 + BWI76_RS07045 0.17 -0.3
1,481,952 + BWI76_RS07045 0.17 -0.7
1,481,960 - BWI76_RS07045 0.17 +0.1
1,481,960 - BWI76_RS07045 0.17 -1.9
1,481,960 - BWI76_RS07045 0.17 -0.5
1,481,960 - BWI76_RS07045 0.17 +0.3
1,481,967 - BWI76_RS07045 0.17 -0.9
1,481,971 + BWI76_RS07045 0.18 -2.3
1,481,971 + BWI76_RS07045 0.18 +0.6
1,481,977 + BWI76_RS07045 0.18 +1.5
1,482,072 - BWI76_RS07045 0.24 +0.9
1,482,197 - BWI76_RS07045 0.31 -0.1
1,482,590 + BWI76_RS07045 0.55 +0.9
1,482,645 + BWI76_RS07045 0.58 +0.1
1,482,734 + BWI76_RS07045 0.63 -1.1
1,482,775 - BWI76_RS07045 0.66 -0.8
1,482,853 + BWI76_RS07045 0.71 -1.0
1,483,151 + BWI76_RS07045 0.88 -0.5
1,483,159 - BWI76_RS07045 0.89 +0.2
1,483,222 - +0.7
1,483,222 - -0.2
1,483,224 + -0.1
1,483,381 - +1.1
1,483,478 + +0.1
1,483,517 - BWI76_RS07050 0.13 -3.1
1,483,523 + BWI76_RS07050 0.13 +0.9
1,483,523 + BWI76_RS07050 0.13 -2.3
1,483,615 + BWI76_RS07050 0.21 +0.6
1,483,623 - BWI76_RS07050 0.21 -0.9
1,483,709 + BWI76_RS07050 0.28 +1.1
1,483,889 - BWI76_RS07050 0.43 +0.8
1,483,924 - BWI76_RS07050 0.45 -0.1
1,483,930 + BWI76_RS07050 0.46 +0.5
1,484,028 - BWI76_RS07050 0.54 -1.1
1,484,054 + BWI76_RS07050 0.56 +0.0
1,484,115 + BWI76_RS07050 0.60 -0.9
1,484,194 - BWI76_RS07050 0.67 -0.1
1,484,211 - +4.6
1,484,225 - BWI76_RS07050 0.69 -0.1
1,484,226 - BWI76_RS07050 0.69 -0.7
1,484,247 - BWI76_RS07050 0.71 -1.2

Or see this region's nucleotide sequence