Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotides BWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotides
BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205
_RS06780
BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998
_RS06785
BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470
_RS06790
Position (kb) 1423
1424 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1422.692 kb on - strand, within BWI76_RS06780 at 1422.782 kb on - strand, within BWI76_RS06780 at 1422.802 kb on + strand, within BWI76_RS06780 at 1422.810 kb on - strand, within BWI76_RS06780 at 1422.831 kb on - strand, within BWI76_RS06780 at 1422.985 kb on + strand, within BWI76_RS06780 at 1423.032 kb on + strand, within BWI76_RS06780 at 1423.034 kb on - strand, within BWI76_RS06780 at 1423.140 kb on - strand at 1423.142 kb on + strand at 1423.161 kb on + strand at 1423.430 kb on + strand, within BWI76_RS06785 at 1423.562 kb on - strand, within BWI76_RS06785 at 1423.660 kb on + strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.976 kb on + strand at 1424.132 kb on - strand at 1424.132 kb on - strand at 1424.626 kb on + strand, within BWI76_RS06790 at 1424.780 kb on - strand, within BWI76_RS06790 at 1424.792 kb on - strand, within BWI76_RS06790 at 1424.951 kb on + strand, within BWI76_RS06790
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,422,692 - BWI76_RS06780 0.57 -4.2 1,422,782 - BWI76_RS06780 0.64 +0.9 1,422,802 + BWI76_RS06780 0.66 -0.1 1,422,810 - BWI76_RS06780 0.67 -0.4 1,422,831 - BWI76_RS06780 0.69 -0.9 1,422,985 + BWI76_RS06780 0.81 +0.7 1,423,032 + BWI76_RS06780 0.85 -4.4 1,423,034 - BWI76_RS06780 0.86 -0.7 1,423,140 - +1.6 1,423,142 + -0.4 1,423,161 + -1.4 1,423,430 + BWI76_RS06785 0.13 -2.0 1,423,562 - BWI76_RS06785 0.33 +0.0 1,423,660 + BWI76_RS06785 0.48 -0.5 1,423,786 - BWI76_RS06785 0.67 -1.7 1,423,786 - BWI76_RS06785 0.67 -4.4 1,423,906 - BWI76_RS06785 0.86 +0.9 1,423,906 - BWI76_RS06785 0.86 -2.3 1,423,916 - BWI76_RS06785 0.87 +2.5 1,423,916 - BWI76_RS06785 0.87 +0.6 1,423,976 + -0.6 1,424,132 - +0.7 1,424,132 - +0.4 1,424,626 + BWI76_RS06790 0.15 +0.3 1,424,780 - BWI76_RS06790 0.19 +1.0 1,424,792 - BWI76_RS06790 0.20 -0.9 1,424,951 + BWI76_RS06790 0.25 +0.9
Or see this region's nucleotide sequence