Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05935 and BWI76_RS05940 overlap by 32 nucleotides BWI76_RS05940 and BWI76_RS05945 are separated by 27 nucleotides BWI76_RS05945 and BWI76_RS05950 overlap by 11 nucleotides
BWI76_RS05935: BWI76_RS05935 - hypothetical protein, at 1,248,024 to 1,249,667
_RS05935
BWI76_RS05940: BWI76_RS05940 - hypothetical protein, at 1,249,636 to 1,250,340
_RS05940
BWI76_RS05945: BWI76_RS05945 - amino acid ABC transporter permease, at 1,250,368 to 1,251,051
_RS05945
BWI76_RS05950: BWI76_RS05950 - polar amino acid ABC transporter inner membrane subunit, at 1,251,041 to 1,251,793
_RS05950
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1248.749 kb on - strand, within BWI76_RS05935 at 1248.831 kb on + strand, within BWI76_RS05935 at 1248.917 kb on - strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.962 kb on + strand, within BWI76_RS05935 at 1248.965 kb on - strand, within BWI76_RS05935 at 1249.193 kb on + strand, within BWI76_RS05935 at 1249.212 kb on + strand, within BWI76_RS05935 at 1249.372 kb on + strand, within BWI76_RS05935 at 1249.415 kb on + strand, within BWI76_RS05935 at 1249.415 kb on + strand, within BWI76_RS05935 at 1249.449 kb on + strand, within BWI76_RS05935 at 1249.476 kb on + strand, within BWI76_RS05935 at 1249.481 kb on + strand, within BWI76_RS05935 at 1249.481 kb on + strand, within BWI76_RS05935 at 1249.621 kb on - strand at 1249.717 kb on + strand, within BWI76_RS05940 at 1249.913 kb on + strand, within BWI76_RS05940 at 1249.921 kb on - strand, within BWI76_RS05940 at 1249.929 kb on - strand, within BWI76_RS05940 at 1250.122 kb on + strand, within BWI76_RS05940 at 1250.176 kb on - strand, within BWI76_RS05940 at 1250.291 kb on - strand at 1250.293 kb on - strand at 1250.317 kb on + strand at 1250.427 kb on - strand at 1250.465 kb on + strand, within BWI76_RS05945 at 1250.465 kb on + strand, within BWI76_RS05945 at 1250.473 kb on - strand, within BWI76_RS05945 at 1250.554 kb on - strand, within BWI76_RS05945 at 1250.596 kb on - strand, within BWI76_RS05945 at 1250.729 kb on + strand, within BWI76_RS05945 at 1250.929 kb on - strand, within BWI76_RS05945
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 1,248,749 - BWI76_RS05935 0.44 +1.7 1,248,831 + BWI76_RS05935 0.49 +1.0 1,248,917 - BWI76_RS05935 0.54 -0.7 1,248,957 + BWI76_RS05935 0.57 -1.0 1,248,957 + BWI76_RS05935 0.57 -0.2 1,248,957 + BWI76_RS05935 0.57 +0.1 1,248,962 + BWI76_RS05935 0.57 +0.0 1,248,965 - BWI76_RS05935 0.57 -3.8 1,249,193 + BWI76_RS05935 0.71 -3.0 1,249,212 + BWI76_RS05935 0.72 +0.9 1,249,372 + BWI76_RS05935 0.82 -2.1 1,249,415 + BWI76_RS05935 0.85 -0.9 1,249,415 + BWI76_RS05935 0.85 +0.7 1,249,449 + BWI76_RS05935 0.87 -0.7 1,249,476 + BWI76_RS05935 0.88 +0.3 1,249,481 + BWI76_RS05935 0.89 +0.0 1,249,481 + BWI76_RS05935 0.89 -0.1 1,249,621 - -0.3 1,249,717 + BWI76_RS05940 0.11 +1.1 1,249,913 + BWI76_RS05940 0.39 -0.7 1,249,921 - BWI76_RS05940 0.40 +0.3 1,249,929 - BWI76_RS05940 0.42 +0.9 1,250,122 + BWI76_RS05940 0.69 -0.3 1,250,176 - BWI76_RS05940 0.77 +0.1 1,250,291 - -1.0 1,250,293 - +0.7 1,250,317 + -0.5 1,250,427 - -3.3 1,250,465 + BWI76_RS05945 0.14 +0.7 1,250,465 + BWI76_RS05945 0.14 +1.0 1,250,473 - BWI76_RS05945 0.15 -1.6 1,250,554 - BWI76_RS05945 0.27 -1.7 1,250,596 - BWI76_RS05945 0.33 -0.7 1,250,729 + BWI76_RS05945 0.53 -0.8 1,250,929 - BWI76_RS05945 0.82 +0.9
Or see this region's nucleotide sequence