Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03690 and BWI76_RS03695 are separated by 177 nucleotides BWI76_RS03695 and BWI76_RS03700 are separated by 339 nucleotides BWI76_RS03700 and BWI76_RS03705 are separated by 6 nucleotides
BWI76_RS03690: BWI76_RS03690 - transcriptional regulator, GntR family/aminotransferase family protein, at 766,318 to 767,730
_RS03690
BWI76_RS03695: BWI76_RS03695 - DUF1127 domain-containing protein, at 767,908 to 768,072
_RS03695
BWI76_RS03700: BWI76_RS03700 - hypothetical protein, at 768,412 to 768,876
_RS03700
BWI76_RS03705: BWI76_RS03705 - secretion protein, at 768,883 to 769,950
_RS03705
Position (kb) 768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.598 kb on + strand at 767.666 kb on + strand at 767.720 kb on - strand at 767.900 kb on - strand at 768.197 kb on - strand at 768.262 kb on - strand at 768.266 kb on + strand at 768.297 kb on - strand at 768.297 kb on - strand at 768.297 kb on - strand at 768.610 kb on - strand, within BWI76_RS03700 at 768.637 kb on - strand, within BWI76_RS03700 at 768.673 kb on - strand, within BWI76_RS03700 at 768.914 kb on + strand at 768.922 kb on - strand at 768.950 kb on - strand at 769.219 kb on - strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.228 kb on + strand, within BWI76_RS03705 at 769.236 kb on - strand, within BWI76_RS03705 at 769.247 kb on + strand, within BWI76_RS03705 at 769.317 kb on - strand, within BWI76_RS03705 at 769.529 kb on + strand, within BWI76_RS03705 at 769.532 kb on - strand, within BWI76_RS03705 at 769.532 kb on - strand, within BWI76_RS03705 at 769.537 kb on + strand, within BWI76_RS03705 at 769.640 kb on - strand, within BWI76_RS03705 at 769.732 kb on - strand, within BWI76_RS03705 at 769.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 767,598 + +1.0 767,666 + -0.2 767,720 - +0.5 767,900 - -0.4 768,197 - -3.3 768,262 - +0.8 768,266 + +2.1 768,297 - +0.4 768,297 - -0.3 768,297 - -0.5 768,610 - BWI76_RS03700 0.43 +0.3 768,637 - BWI76_RS03700 0.48 +0.9 768,673 - BWI76_RS03700 0.56 +1.4 768,914 + +1.0 768,922 - -0.2 768,950 - +0.3 769,219 - BWI76_RS03705 0.31 +0.6 769,228 + BWI76_RS03705 0.32 +0.7 769,228 + BWI76_RS03705 0.32 +1.1 769,228 + BWI76_RS03705 0.32 -2.3 769,236 - BWI76_RS03705 0.33 +0.1 769,247 + BWI76_RS03705 0.34 +1.0 769,317 - BWI76_RS03705 0.41 +0.0 769,529 + BWI76_RS03705 0.60 -0.6 769,532 - BWI76_RS03705 0.61 -2.3 769,532 - BWI76_RS03705 0.61 +1.8 769,537 + BWI76_RS03705 0.61 +1.0 769,640 - BWI76_RS03705 0.71 +0.3 769,732 - BWI76_RS03705 0.79 -0.4 769,869 - -2.6
Or see this region's nucleotide sequence