Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03440 and BWI76_RS03445 are separated by 144 nucleotides BWI76_RS03445 and BWI76_RS03450 are separated by 566 nucleotides
BWI76_RS03440: BWI76_RS03440 - MFS transporter, at 707,547 to 708,998
_RS03440
BWI76_RS03445: BWI76_RS03445 - hypothetical protein, at 709,143 to 710,792
_RS03445
BWI76_RS03450: BWI76_RS03450 - MFS transporter, at 711,359 to 712,723
_RS03450
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.190 kb on - strand, within BWI76_RS03440 at 708.287 kb on - strand, within BWI76_RS03440 at 708.304 kb on + strand, within BWI76_RS03440 at 708.517 kb on + strand, within BWI76_RS03440 at 708.550 kb on + strand, within BWI76_RS03440 at 708.599 kb on + strand, within BWI76_RS03440 at 708.599 kb on + strand, within BWI76_RS03440 at 708.643 kb on + strand, within BWI76_RS03440 at 708.674 kb on - strand, within BWI76_RS03440 at 708.748 kb on + strand, within BWI76_RS03440 at 708.779 kb on + strand, within BWI76_RS03440 at 708.809 kb on + strand, within BWI76_RS03440 at 708.908 kb on + strand at 708.913 kb on + strand at 708.921 kb on - strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.924 kb on + strand at 708.931 kb on + strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.932 kb on - strand at 708.936 kb on + strand at 708.940 kb on - strand at 708.941 kb on - strand at 708.960 kb on - strand at 709.005 kb on - strand at 709.005 kb on - strand at 709.019 kb on - strand at 709.021 kb on + strand at 709.021 kb on + strand at 709.029 kb on - strand at 709.040 kb on - strand at 709.042 kb on + strand at 709.042 kb on + strand at 709.045 kb on - strand at 709.045 kb on - strand at 709.052 kb on + strand at 709.055 kb on - strand at 709.055 kb on - strand at 709.216 kb on - strand at 709.226 kb on + strand at 709.230 kb on + strand at 709.236 kb on + strand at 709.244 kb on + strand at 709.249 kb on + strand at 709.249 kb on + strand at 709.249 kb on + strand at 709.257 kb on - strand at 709.267 kb on + strand at 709.275 kb on - strand at 709.306 kb on + strand at 709.319 kb on - strand, within BWI76_RS03445 at 709.465 kb on + strand, within BWI76_RS03445 at 709.465 kb on + strand, within BWI76_RS03445 at 709.473 kb on - strand, within BWI76_RS03445 at 709.473 kb on - strand, within BWI76_RS03445 at 709.483 kb on - strand, within BWI76_RS03445 at 709.707 kb on + strand, within BWI76_RS03445 at 709.710 kb on - strand, within BWI76_RS03445 at 709.755 kb on - strand, within BWI76_RS03445 at 709.945 kb on - strand, within BWI76_RS03445 at 709.952 kb on + strand, within BWI76_RS03445 at 710.012 kb on - strand, within BWI76_RS03445 at 710.132 kb on + strand, within BWI76_RS03445 at 710.389 kb on + strand, within BWI76_RS03445 at 710.447 kb on - strand, within BWI76_RS03445 at 710.616 kb on + strand, within BWI76_RS03445 at 710.621 kb on + strand, within BWI76_RS03445 at 710.627 kb on + strand, within BWI76_RS03445 at 710.667 kb on - strand at 710.806 kb on + strand at 710.857 kb on - strand at 711.058 kb on - strand at 711.302 kb on + strand at 711.388 kb on - strand at 711.439 kb on + strand at 711.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 708,190 - BWI76_RS03440 0.44 +0.2 708,287 - BWI76_RS03440 0.51 +0.0 708,304 + BWI76_RS03440 0.52 -0.6 708,517 + BWI76_RS03440 0.67 -1.3 708,550 + BWI76_RS03440 0.69 -0.4 708,599 + BWI76_RS03440 0.72 -0.8 708,599 + BWI76_RS03440 0.72 -1.6 708,643 + BWI76_RS03440 0.75 -0.9 708,674 - BWI76_RS03440 0.78 +0.1 708,748 + BWI76_RS03440 0.83 +1.2 708,779 + BWI76_RS03440 0.85 +0.0 708,809 + BWI76_RS03440 0.87 -1.1 708,908 + +0.6 708,913 + +0.4 708,921 - -0.2 708,924 + -0.7 708,924 + +0.7 708,924 + +1.1 708,924 + -1.1 708,924 + +0.1 708,924 + -0.3 708,924 + +1.0 708,924 + -1.0 708,924 + +0.6 708,924 + +0.6 708,931 + -0.0 708,932 - +1.6 708,932 - -0.5 708,932 - -3.4 708,932 - +0.1 708,932 - -2.2 708,932 - -1.0 708,932 - +2.4 708,932 - -1.8 708,932 - +0.6 708,936 + -1.2 708,940 - +0.2 708,941 - -0.5 708,960 - +1.3 709,005 - -1.2 709,005 - -0.1 709,019 - -3.0 709,021 + -0.6 709,021 + +0.4 709,029 - -1.0 709,040 - -2.7 709,042 + +0.4 709,042 + +0.7 709,045 - -0.6 709,045 - -1.6 709,052 + -2.7 709,055 - +0.4 709,055 - -1.0 709,216 - -0.2 709,226 + +0.2 709,230 + -1.6 709,236 + -0.4 709,244 + -0.2 709,249 + -0.6 709,249 + +1.5 709,249 + -0.3 709,257 - -0.4 709,267 + +0.9 709,275 - -1.5 709,306 + +0.9 709,319 - BWI76_RS03445 0.11 +1.3 709,465 + BWI76_RS03445 0.20 +1.3 709,465 + BWI76_RS03445 0.20 +1.4 709,473 - BWI76_RS03445 0.20 -0.0 709,473 - BWI76_RS03445 0.20 -2.8 709,483 - BWI76_RS03445 0.21 +1.5 709,707 + BWI76_RS03445 0.34 +0.2 709,710 - BWI76_RS03445 0.34 +0.7 709,755 - BWI76_RS03445 0.37 -0.7 709,945 - BWI76_RS03445 0.49 +1.8 709,952 + BWI76_RS03445 0.49 -2.1 710,012 - BWI76_RS03445 0.53 +0.4 710,132 + BWI76_RS03445 0.60 +0.7 710,389 + BWI76_RS03445 0.76 +0.0 710,447 - BWI76_RS03445 0.79 -2.4 710,616 + BWI76_RS03445 0.89 +0.3 710,621 + BWI76_RS03445 0.90 -1.6 710,627 + BWI76_RS03445 0.90 +0.7 710,667 - -2.3 710,806 + -0.6 710,857 - +0.2 711,058 - +1.2 711,302 + -0.4 711,388 - +1.0 711,439 + -1.5 711,461 - +0.5
Or see this region's nucleotide sequence