Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03100

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03095 and BWI76_RS03100 are separated by 41 nucleotidesBWI76_RS03100 and BWI76_RS03105 are separated by 24 nucleotides BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) (from data), at 637,168 to 638,181 _RS03095 BWI76_RS03100: BWI76_RS03100 - protein iolH, at 638,223 to 639,107 _RS03100 BWI76_RS03105: BWI76_RS03105 - myo-inosose-2 dehydratase, at 639,132 to 640,031 _RS03105 Position (kb) 638 639 640Strain fitness (log2 ratio) -2 -1 0 1at 637.410 kb on - strand, within BWI76_RS03095at 637.439 kb on + strand, within BWI76_RS03095at 637.923 kb on + strand, within BWI76_RS03095at 638.203 kb on + strandat 638.221 kb on - strandat 638.257 kb on + strandat 638.597 kb on - strand, within BWI76_RS03100at 638.782 kb on + strand, within BWI76_RS03100at 638.801 kb on - strand, within BWI76_RS03100at 638.887 kb on - strand, within BWI76_RS03100at 638.951 kb on + strand, within BWI76_RS03100at 638.959 kb on - strand, within BWI76_RS03100at 639.037 kb on - strandat 639.070 kb on + strandat 639.071 kb on - strandat 639.071 kb on - strandat 639.214 kb on - strandat 639.769 kb on - strand, within BWI76_RS03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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637,410 - BWI76_RS03095 0.24 +0.0
637,439 + BWI76_RS03095 0.27 -1.3
637,923 + BWI76_RS03095 0.74 -0.4
638,203 + +0.6
638,221 - -0.0
638,257 + +0.5
638,597 - BWI76_RS03100 0.42 -1.9
638,782 + BWI76_RS03100 0.63 +0.2
638,801 - BWI76_RS03100 0.65 -0.4
638,887 - BWI76_RS03100 0.75 +0.3
638,951 + BWI76_RS03100 0.82 +0.6
638,959 - BWI76_RS03100 0.83 -0.9
639,037 - -1.6
639,070 + -0.4
639,071 - -1.9
639,071 - -0.5
639,214 - +0.1
639,769 - BWI76_RS03105 0.71 +0.7

Or see this region's nucleotide sequence