Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02260 and BWI76_RS02265 are separated by 149 nucleotides BWI76_RS02265 and BWI76_RS02270 are separated by 224 nucleotides
BWI76_RS02260: BWI76_RS02260 - DNA-binding protein, at 464,785 to 465,705
_RS02260
BWI76_RS02265: BWI76_RS02265 - putative transmembrane protein, at 465,855 to 466,535
_RS02265
BWI76_RS02270: BWI76_RS02270 - DSBA oxidoreductase, at 466,760 to 467,542
_RS02270
Position (kb) 465
466
467 Strain fitness (log2 ratio) -2
-1
0
1
2 at 464.934 kb on + strand, within BWI76_RS02260 at 464.934 kb on + strand, within BWI76_RS02260 at 465.097 kb on - strand, within BWI76_RS02260 at 465.279 kb on + strand, within BWI76_RS02260 at 465.435 kb on + strand, within BWI76_RS02260 at 465.437 kb on + strand, within BWI76_RS02260 at 465.445 kb on - strand, within BWI76_RS02260 at 465.536 kb on - strand, within BWI76_RS02260 at 465.608 kb on - strand, within BWI76_RS02260 at 465.647 kb on - strand at 465.647 kb on - strand at 465.647 kb on - strand at 465.801 kb on - strand at 465.853 kb on + strand at 465.907 kb on - strand at 465.907 kb on - strand at 465.925 kb on - strand, within BWI76_RS02265 at 466.201 kb on - strand, within BWI76_RS02265 at 466.315 kb on - strand, within BWI76_RS02265 at 466.421 kb on + strand, within BWI76_RS02265 at 466.429 kb on - strand, within BWI76_RS02265 at 466.434 kb on - strand, within BWI76_RS02265 at 466.589 kb on + strand at 466.589 kb on + strand at 466.589 kb on + strand at 466.591 kb on - strand at 466.597 kb on - strand at 466.606 kb on - strand at 466.614 kb on + strand at 466.695 kb on + strand at 466.740 kb on - strand at 466.859 kb on + strand, within BWI76_RS02270 at 466.926 kb on - strand, within BWI76_RS02270 at 466.958 kb on + strand, within BWI76_RS02270 at 466.971 kb on - strand, within BWI76_RS02270 at 466.993 kb on - strand, within BWI76_RS02270 at 467.193 kb on - strand, within BWI76_RS02270 at 467.256 kb on - strand, within BWI76_RS02270
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 464,934 + BWI76_RS02260 0.16 +1.0 464,934 + BWI76_RS02260 0.16 +0.7 465,097 - BWI76_RS02260 0.34 +1.0 465,279 + BWI76_RS02260 0.54 -0.4 465,435 + BWI76_RS02260 0.71 -0.2 465,437 + BWI76_RS02260 0.71 +2.3 465,445 - BWI76_RS02260 0.72 +2.2 465,536 - BWI76_RS02260 0.82 -0.8 465,608 - BWI76_RS02260 0.89 -0.9 465,647 - +1.3 465,647 - -2.0 465,647 - -0.6 465,801 - -0.4 465,853 + -2.6 465,907 - -0.6 465,907 - +0.1 465,925 - BWI76_RS02265 0.10 -0.3 466,201 - BWI76_RS02265 0.51 +0.6 466,315 - BWI76_RS02265 0.68 -1.4 466,421 + BWI76_RS02265 0.83 -0.9 466,429 - BWI76_RS02265 0.84 -0.3 466,434 - BWI76_RS02265 0.85 -0.7 466,589 + -0.3 466,589 + +1.3 466,589 + -0.2 466,591 - +0.0 466,597 - -0.5 466,606 - +0.0 466,614 + +0.2 466,695 + +1.1 466,740 - +1.0 466,859 + BWI76_RS02270 0.13 +0.4 466,926 - BWI76_RS02270 0.21 -0.1 466,958 + BWI76_RS02270 0.25 +0.9 466,971 - BWI76_RS02270 0.27 +0.8 466,993 - BWI76_RS02270 0.30 +1.4 467,193 - BWI76_RS02270 0.55 +2.6 467,256 - BWI76_RS02270 0.63 -0.9
Or see this region's nucleotide sequence