Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01685 and BWI76_RS01690 are separated by 185 nucleotides BWI76_RS01690 and BWI76_RS01695 are separated by 261 nucleotides
BWI76_RS01685: BWI76_RS01685 - methionine synthase, at 343,151 to 346,834
_RS01685
BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651
_RS01690
BWI76_RS01695: BWI76_RS01695 - IS110 family transposase, at 348,913 to 349,893
_RS01695
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.086 kb on - strand, within BWI76_RS01685 at 346.116 kb on - strand, within BWI76_RS01685 at 346.329 kb on + strand, within BWI76_RS01685 at 346.413 kb on - strand, within BWI76_RS01685 at 346.575 kb on + strand at 346.610 kb on - strand at 346.756 kb on - strand at 346.872 kb on + strand at 346.909 kb on + strand at 346.909 kb on + strand at 346.910 kb on - strand at 346.983 kb on - strand at 347.029 kb on + strand at 347.043 kb on - strand at 347.097 kb on - strand at 347.097 kb on - strand at 347.121 kb on - strand at 347.263 kb on + strand, within BWI76_RS01690 at 347.321 kb on + strand, within BWI76_RS01690 at 347.478 kb on - strand, within BWI76_RS01690 at 347.495 kb on - strand, within BWI76_RS01690 at 347.657 kb on - strand, within BWI76_RS01690 at 347.813 kb on - strand, within BWI76_RS01690 at 347.927 kb on - strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 348.590 kb on + strand at 348.598 kb on - strand at 348.607 kb on - strand at 348.669 kb on + strand at 348.971 kb on + strand at 349.010 kb on + strand at 349.027 kb on + strand, within BWI76_RS01695 at 349.073 kb on + strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.093 kb on + strand, within BWI76_RS01695 at 349.097 kb on + strand, within BWI76_RS01695 at 349.102 kb on + strand, within BWI76_RS01695 at 349.492 kb on - strand, within BWI76_RS01695 at 349.569 kb on + strand, within BWI76_RS01695 at 349.607 kb on + strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 346,086 - BWI76_RS01685 0.80 +0.9 346,116 - BWI76_RS01685 0.80 +2.5 346,329 + BWI76_RS01685 0.86 -1.0 346,413 - BWI76_RS01685 0.89 +1.4 346,575 + +0.1 346,610 - +1.9 346,756 - -0.2 346,872 + -1.8 346,909 + +0.8 346,909 + -0.8 346,910 - +0.2 346,983 - +0.4 347,029 + -1.0 347,043 - -1.3 347,097 - +0.5 347,097 - +0.5 347,121 - -1.3 347,263 + BWI76_RS01690 0.15 +2.0 347,321 + BWI76_RS01690 0.18 +0.5 347,478 - BWI76_RS01690 0.28 +1.0 347,495 - BWI76_RS01690 0.29 -2.1 347,657 - BWI76_RS01690 0.39 -0.6 347,813 - BWI76_RS01690 0.49 -1.6 347,927 - BWI76_RS01690 0.56 -1.4 347,994 + BWI76_RS01690 0.60 +2.5 347,994 + BWI76_RS01690 0.60 +0.9 348,590 + -0.8 348,598 - +0.7 348,607 - +1.0 348,669 + +0.4 348,971 + +1.4 349,010 + +2.3 349,027 + BWI76_RS01695 0.12 -1.0 349,073 + BWI76_RS01695 0.16 -0.6 349,081 - BWI76_RS01695 0.17 +0.3 349,081 - BWI76_RS01695 0.17 +1.1 349,081 - BWI76_RS01695 0.17 +0.0 349,081 - BWI76_RS01695 0.17 +2.0 349,093 + BWI76_RS01695 0.18 +1.3 349,097 + BWI76_RS01695 0.19 +0.3 349,102 + BWI76_RS01695 0.19 +0.9 349,492 - BWI76_RS01695 0.59 -0.1 349,569 + BWI76_RS01695 0.67 +0.5 349,607 + BWI76_RS01695 0.71 +0.6 349,633 - BWI76_RS01695 0.73 +1.3 349,633 - BWI76_RS01695 0.73 +0.8
Or see this region's nucleotide sequence