Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01575

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01570 and BWI76_RS01575 are separated by 9 nucleotidesBWI76_RS01575 and BWI76_RS01580 are separated by 42 nucleotidesBWI76_RS01580 and BWI76_RS01585 are separated by 186 nucleotides BWI76_RS01570: BWI76_RS01570 - uroporphyrinogen decarboxylase, at 319,579 to 320,643 _RS01570 BWI76_RS01575: BWI76_RS01575 - endonuclease V, at 320,653 to 321,324 _RS01575 BWI76_RS01580: BWI76_RS01580 - hypothetical protein, at 321,367 to 321,957 _RS01580 BWI76_RS01585: BWI76_RS01585 - transcriptional regulator, at 322,144 to 322,416 _RS01585 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 320.637 kb on + strandat 320.803 kb on + strand, within BWI76_RS01575at 320.805 kb on + strand, within BWI76_RS01575at 320.873 kb on - strand, within BWI76_RS01575at 320.918 kb on - strand, within BWI76_RS01575at 321.111 kb on + strand, within BWI76_RS01575at 321.201 kb on - strand, within BWI76_RS01575at 321.201 kb on - strand, within BWI76_RS01575at 321.201 kb on - strand, within BWI76_RS01575at 321.201 kb on - strand, within BWI76_RS01575at 321.210 kb on + strand, within BWI76_RS01575at 321.211 kb on - strand, within BWI76_RS01575at 321.246 kb on + strand, within BWI76_RS01575at 321.263 kb on + strandat 321.617 kb on + strand, within BWI76_RS01580at 321.625 kb on - strand, within BWI76_RS01580at 321.888 kb on + strand, within BWI76_RS01580at 322.181 kb on + strand, within BWI76_RS01585at 322.181 kb on + strandat 322.189 kb on - strand, within BWI76_RS01585at 322.220 kb on + strand, within BWI76_RS01585at 322.289 kb on + strand, within BWI76_RS01585at 322.305 kb on - strand, within BWI76_RS01585at 322.310 kb on - strand, within BWI76_RS01585

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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320,637 + +1.2
320,803 + BWI76_RS01575 0.22 -0.0
320,805 + BWI76_RS01575 0.23 -2.0
320,873 - BWI76_RS01575 0.33 +0.5
320,918 - BWI76_RS01575 0.39 +0.2
321,111 + BWI76_RS01575 0.68 +0.9
321,201 - BWI76_RS01575 0.82 +1.7
321,201 - BWI76_RS01575 0.82 -0.1
321,201 - BWI76_RS01575 0.82 -0.6
321,201 - BWI76_RS01575 0.82 +0.3
321,210 + BWI76_RS01575 0.83 -1.0
321,211 - BWI76_RS01575 0.83 +0.7
321,246 + BWI76_RS01575 0.88 -0.8
321,263 + +1.8
321,617 + BWI76_RS01580 0.42 -1.1
321,625 - BWI76_RS01580 0.44 -0.6
321,888 + BWI76_RS01580 0.88 +0.5
322,181 + BWI76_RS01585 0.14 +2.1
322,181 + +1.7
322,189 - BWI76_RS01585 0.16 +2.4
322,220 + BWI76_RS01585 0.28 +2.3
322,289 + BWI76_RS01585 0.53 +0.9
322,305 - BWI76_RS01585 0.59 +1.7
322,310 - BWI76_RS01585 0.61 +2.5

Or see this region's nucleotide sequence