Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01260 and BWI76_RS01265 are separated by 43 nucleotides BWI76_RS01265 and BWI76_RS01270 are separated by 88 nucleotides BWI76_RS01270 and BWI76_RS01275 overlap by 113 nucleotides
BWI76_RS01260: BWI76_RS01260 - lysophospholipase L2, at 258,083 to 259,075
_RS01260
BWI76_RS01265: BWI76_RS01265 - sugar/pyridoxal phosphate phosphatase YigL, at 259,119 to 259,919
_RS01265
BWI76_RS01270: BWI76_RS01270 - hypothetical protein, at 260,008 to 260,907
_RS01270
BWI76_RS01275: BWI76_RS01275 - LysR family transcriptional regulator, at 260,795 to 261,748
_RS01275
Position (kb) 259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 258.332 kb on - strand, within BWI76_RS01260 at 258.485 kb on + strand, within BWI76_RS01260 at 258.620 kb on + strand, within BWI76_RS01260 at 258.620 kb on + strand, within BWI76_RS01260 at 258.628 kb on - strand, within BWI76_RS01260 at 258.689 kb on + strand, within BWI76_RS01260 at 258.907 kb on - strand, within BWI76_RS01260 at 258.955 kb on - strand, within BWI76_RS01260 at 258.963 kb on + strand, within BWI76_RS01260 at 259.069 kb on + strand at 259.099 kb on + strand at 259.099 kb on + strand at 259.186 kb on + strand at 259.508 kb on - strand, within BWI76_RS01265 at 259.635 kb on + strand, within BWI76_RS01265 at 259.660 kb on + strand, within BWI76_RS01265 at 259.701 kb on - strand, within BWI76_RS01265 at 259.750 kb on - strand, within BWI76_RS01265 at 259.760 kb on + strand, within BWI76_RS01265 at 259.769 kb on - strand, within BWI76_RS01265 at 259.806 kb on + strand, within BWI76_RS01265 at 259.846 kb on - strand at 260.025 kb on - strand at 260.056 kb on - strand at 260.125 kb on + strand, within BWI76_RS01270 at 260.163 kb on + strand, within BWI76_RS01270 at 260.184 kb on + strand, within BWI76_RS01270 at 260.206 kb on - strand, within BWI76_RS01270 at 260.450 kb on + strand, within BWI76_RS01270 at 260.451 kb on + strand, within BWI76_RS01270 at 260.459 kb on - strand, within BWI76_RS01270 at 260.522 kb on - strand, within BWI76_RS01270 at 260.522 kb on - strand, within BWI76_RS01270 at 260.578 kb on - strand, within BWI76_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 258,332 - BWI76_RS01260 0.25 +0.1 258,485 + BWI76_RS01260 0.40 -0.3 258,620 + BWI76_RS01260 0.54 +1.1 258,620 + BWI76_RS01260 0.54 +1.0 258,628 - BWI76_RS01260 0.55 +0.8 258,689 + BWI76_RS01260 0.61 -0.0 258,907 - BWI76_RS01260 0.83 -1.4 258,955 - BWI76_RS01260 0.88 +0.6 258,963 + BWI76_RS01260 0.89 -1.9 259,069 + +1.5 259,099 + -3.6 259,099 + -0.0 259,186 + +0.3 259,508 - BWI76_RS01265 0.49 -0.7 259,635 + BWI76_RS01265 0.64 +0.3 259,660 + BWI76_RS01265 0.68 +1.5 259,701 - BWI76_RS01265 0.73 +0.9 259,750 - BWI76_RS01265 0.79 +1.2 259,760 + BWI76_RS01265 0.80 +0.7 259,769 - BWI76_RS01265 0.81 +0.1 259,806 + BWI76_RS01265 0.86 +0.7 259,846 - -1.9 260,025 - -1.7 260,056 - -0.8 260,125 + BWI76_RS01270 0.13 +0.8 260,163 + BWI76_RS01270 0.17 -0.6 260,184 + BWI76_RS01270 0.20 -0.0 260,206 - BWI76_RS01270 0.22 -1.7 260,450 + BWI76_RS01270 0.49 +1.0 260,451 + BWI76_RS01270 0.49 -2.3 260,459 - BWI76_RS01270 0.50 -0.2 260,522 - BWI76_RS01270 0.57 +1.4 260,522 - BWI76_RS01270 0.57 +0.5 260,578 - BWI76_RS01270 0.63 -0.3
Or see this region's nucleotide sequence