Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01015

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01005 and BWI76_RS01010 are separated by 24 nucleotidesBWI76_RS01010 and BWI76_RS01015 overlap by 1 nucleotidesBWI76_RS01015 and BWI76_RS01020 are separated by 102 nucleotides BWI76_RS01005: BWI76_RS01005 - CarD family transcriptional regulator, at 205,190 to 205,894 _RS01005 BWI76_RS01010: BWI76_RS01010 - uridine phosphorylase, at 205,919 to 206,668 _RS01010 BWI76_RS01015: BWI76_RS01015 - nicotinamide riboside transporter PnuC, at 206,668 to 207,390 _RS01015 BWI76_RS01020: BWI76_RS01020 - DNA helicase Rep, at 207,493 to 209,511 _RS01020 Position (kb) 206 207 208Strain fitness (log2 ratio) -1 0 1 2at 205.812 kb on - strand, within BWI76_RS01005at 205.812 kb on - strand, within BWI76_RS01005at 205.938 kb on - strandat 206.028 kb on + strand, within BWI76_RS01010at 206.077 kb on + strand, within BWI76_RS01010at 206.081 kb on - strand, within BWI76_RS01010at 206.201 kb on + strand, within BWI76_RS01010at 206.456 kb on + strand, within BWI76_RS01010at 206.456 kb on + strand, within BWI76_RS01010at 206.464 kb on - strand, within BWI76_RS01010at 206.464 kb on - strand, within BWI76_RS01010at 206.464 kb on - strand, within BWI76_RS01010at 206.993 kb on + strand, within BWI76_RS01015at 207.049 kb on + strand, within BWI76_RS01015at 207.203 kb on - strand, within BWI76_RS01015at 207.373 kb on - strandat 207.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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205,812 - BWI76_RS01005 0.88 +0.8
205,812 - BWI76_RS01005 0.88 +0.4
205,938 - +1.1
206,028 + BWI76_RS01010 0.15 +1.0
206,077 + BWI76_RS01010 0.21 +1.6
206,081 - BWI76_RS01010 0.22 +0.4
206,201 + BWI76_RS01010 0.38 -0.9
206,456 + BWI76_RS01010 0.72 +1.1
206,456 + BWI76_RS01010 0.72 +0.5
206,464 - BWI76_RS01010 0.73 +1.6
206,464 - BWI76_RS01010 0.73 +1.0
206,464 - BWI76_RS01010 0.73 +0.8
206,993 + BWI76_RS01015 0.45 -0.3
207,049 + BWI76_RS01015 0.53 +1.5
207,203 - BWI76_RS01015 0.74 +2.0
207,373 - +0.6
207,399 + -0.8

Or see this region's nucleotide sequence