Strain Fitness in Shewanella oneidensis MR-1 around SO2232.1

Experiment: Fumarate electron acceptor; ground control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthrpA and SO2232 are separated by 579 nucleotidesSO2232 and SO2232.1 overlap by 108 nucleotidesSO2232.1 and SO_2233 are separated by 25 nucleotides SO2229: hrpA - ATP-dependent helicase HrpA (NCBI ptt file), at 2,345,647 to 2,349,528 hrpA SO2232: SO2232 - hypothetical protein (NCBI ptt file), at 2,350,108 to 2,350,269 SO2232 SO2232.1: SO2232.1 - hypothetical ABC transporter (NCBI ptt file), at 2,350,162 to 2,351,031 SO2232.1 SO_2233: SO_2233 - no description, at 2,351,057 to 2,351,716 _2233 Position (kb) 2350 2351 2352Strain fitness (log2 ratio) -2 -1 0 1 2at 2349.274 kb on - strandat 2349.404 kb on - strandat 2349.537 kb on + strandat 2349.570 kb on - strandat 2349.575 kb on - strandat 2349.649 kb on + strandat 2349.867 kb on - strandat 2349.877 kb on - strandat 2349.985 kb on + strandat 2349.993 kb on - strandat 2349.993 kb on - strandat 2349.993 kb on - strandat 2349.993 kb on - strandat 2350.033 kb on + strandat 2350.041 kb on - strandat 2350.156 kb on + strand, within SO2232at 2350.453 kb on - strand, within SO2232.1at 2350.727 kb on - strand, within SO2232.1at 2350.761 kb on + strand, within SO2232.1at 2350.860 kb on - strand, within SO2232.1at 2350.982 kb on - strandat 2351.010 kb on - strandat 2351.190 kb on + strand, within SO_2233at 2351.296 kb on + strand, within SO_2233at 2351.527 kb on + strand, within SO_2233at 2351.696 kb on + strandat 2351.916 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
remove
2,349,274 - +0.5
2,349,404 - -1.4
2,349,537 + +1.1
2,349,570 - -1.2
2,349,575 - +0.1
2,349,649 + +0.7
2,349,867 - -1.4
2,349,877 - +0.1
2,349,985 + +0.3
2,349,993 - +0.0
2,349,993 - -0.4
2,349,993 - -0.8
2,349,993 - +0.2
2,350,033 + +2.0
2,350,041 - +1.6
2,350,156 + SO2232 0.30 -2.7
2,350,453 - SO2232.1 0.33 -0.8
2,350,727 - SO2232.1 0.65 -0.4
2,350,761 + SO2232.1 0.69 -1.1
2,350,860 - SO2232.1 0.80 -1.6
2,350,982 - -0.6
2,351,010 - +0.1
2,351,190 + SO_2233 0.20 +0.0
2,351,296 + SO_2233 0.36 +1.1
2,351,527 + SO_2233 0.71 +1.2
2,351,696 + -1.0
2,351,916 + +0.7

Or see this region's nucleotide sequence