Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0058 and SOA0059 are separated by 749 nucleotides SOA0059 and SOA0060 are separated by 3 nucleotides SOA0060 and SOA0061 are separated by 186 nucleotides
SO_A0058: SO_A0058 - hypothetical protein (NCBI), at 47,238 to 47,987
_A0058
SOA0059: SOA0059 - conserved hypothetical protein (NCBI ptt file), at 48,737 to 49,027
SOA0059
SOA0060: SOA0060 - acetyltransferase, GNAT family (NCBI ptt file), at 49,031 to 49,558
SOA0060
SOA0061: SOA0061 - parA protein, putative (NCBI ptt file), at 49,745 to 50,431
SOA0061
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 48.312 kb on + strand at 48.334 kb on + strand at 48.334 kb on + strand at 48.334 kb on + strand at 48.341 kb on - strand at 48.358 kb on + strand at 48.461 kb on + strand at 48.713 kb on + strand at 48.744 kb on + strand at 48.774 kb on - strand, within SOA0059 at 48.774 kb on - strand, within SOA0059 at 48.927 kb on + strand, within SOA0059 at 48.935 kb on - strand, within SOA0059 at 49.000 kb on - strand at 49.035 kb on + strand at 49.043 kb on - strand at 49.049 kb on - strand at 49.052 kb on - strand at 49.061 kb on - strand at 49.063 kb on + strand at 49.173 kb on + strand, within SOA0060 at 49.174 kb on + strand, within SOA0060 at 49.174 kb on + strand, within SOA0060 at 49.174 kb on + strand, within SOA0060 at 49.184 kb on + strand, within SOA0060 at 49.196 kb on + strand, within SOA0060 at 49.196 kb on + strand, within SOA0060 at 49.202 kb on + strand, within SOA0060 at 49.202 kb on + strand, within SOA0060 at 49.203 kb on - strand, within SOA0060 at 49.203 kb on - strand, within SOA0060 at 49.203 kb on - strand, within SOA0060 at 49.211 kb on - strand, within SOA0060 at 49.237 kb on + strand, within SOA0060 at 49.239 kb on + strand, within SOA0060 at 49.265 kb on + strand, within SOA0060 at 49.273 kb on - strand, within SOA0060 at 49.297 kb on - strand, within SOA0060 at 49.379 kb on + strand, within SOA0060 at 49.379 kb on + strand, within SOA0060 at 49.379 kb on + strand, within SOA0060 at 49.379 kb on + strand, within SOA0060 at 49.387 kb on - strand, within SOA0060 at 49.387 kb on - strand, within SOA0060 at 49.409 kb on + strand, within SOA0060 at 49.410 kb on - strand, within SOA0060 at 49.429 kb on + strand, within SOA0060 at 49.429 kb on + strand, within SOA0060 at 49.429 kb on + strand, within SOA0060 at 49.429 kb on + strand, within SOA0060 at 49.429 kb on + strand, within SOA0060 at 49.430 kb on - strand, within SOA0060 at 49.432 kb on - strand, within SOA0060 at 49.437 kb on - strand, within SOA0060 at 49.437 kb on - strand, within SOA0060 at 49.462 kb on - strand, within SOA0060 at 49.462 kb on - strand, within SOA0060 at 49.493 kb on + strand, within SOA0060 at 49.493 kb on + strand, within SOA0060 at 49.505 kb on + strand, within SOA0060 at 49.556 kb on - strand at 49.557 kb on + strand at 49.565 kb on - strand at 49.565 kb on - strand at 49.579 kb on + strand at 49.621 kb on + strand at 49.621 kb on + strand at 49.621 kb on + strand at 49.621 kb on + strand at 49.629 kb on + strand at 49.768 kb on + strand at 49.768 kb on + strand at 49.768 kb on + strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.776 kb on - strand at 49.782 kb on - strand at 49.801 kb on + strand at 49.801 kb on + strand at 49.869 kb on - strand, within SOA0061 at 49.880 kb on - strand, within SOA0061 at 49.882 kb on + strand, within SOA0061 at 49.882 kb on + strand, within SOA0061 at 49.882 kb on + strand, within SOA0061 at 49.953 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.958 kb on + strand, within SOA0061 at 49.966 kb on - strand, within SOA0061
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 48,312 + +3.6 48,334 + -1.5 48,334 + -1.9 48,334 + +0.1 48,341 - -1.0 48,358 + -0.3 48,461 + -1.1 48,713 + -1.2 48,744 + +0.7 48,774 - SOA0059 0.13 -3.7 48,774 - SOA0059 0.13 +1.1 48,927 + SOA0059 0.65 -2.1 48,935 - SOA0059 0.68 -1.1 49,000 - -2.8 49,035 + +0.6 49,043 - +2.9 49,049 - +3.7 49,052 - -3.6 49,061 - +0.4 49,063 + +3.6 49,173 + SOA0060 0.27 -1.2 49,174 + SOA0060 0.27 +1.8 49,174 + SOA0060 0.27 +0.3 49,174 + SOA0060 0.27 -1.5 49,184 + SOA0060 0.29 -0.0 49,196 + SOA0060 0.31 -2.2 49,196 + SOA0060 0.31 -2.0 49,202 + SOA0060 0.32 -1.4 49,202 + SOA0060 0.32 -2.3 49,203 - SOA0060 0.33 -1.2 49,203 - SOA0060 0.33 -0.9 49,203 - SOA0060 0.33 +0.2 49,211 - SOA0060 0.34 -0.9 49,237 + SOA0060 0.39 +2.8 49,239 + SOA0060 0.39 +0.4 49,265 + SOA0060 0.44 -3.5 49,273 - SOA0060 0.46 +0.0 49,297 - SOA0060 0.50 -0.7 49,379 + SOA0060 0.66 -2.2 49,379 + SOA0060 0.66 -0.4 49,379 + SOA0060 0.66 -2.2 49,379 + SOA0060 0.66 +0.4 49,387 - SOA0060 0.67 -1.8 49,387 - SOA0060 0.67 +0.2 49,409 + SOA0060 0.72 -2.0 49,410 - SOA0060 0.72 -1.6 49,429 + SOA0060 0.75 -1.8 49,429 + SOA0060 0.75 +1.2 49,429 + SOA0060 0.75 +0.1 49,429 + SOA0060 0.75 -3.4 49,429 + SOA0060 0.75 +0.6 49,430 - SOA0060 0.76 +0.1 49,432 - SOA0060 0.76 +2.0 49,437 - SOA0060 0.77 -3.6 49,437 - SOA0060 0.77 -1.8 49,462 - SOA0060 0.82 -0.9 49,462 - SOA0060 0.82 +0.7 49,493 + SOA0060 0.88 -0.9 49,493 + SOA0060 0.88 -1.3 49,505 + SOA0060 0.90 -0.1 49,556 - +0.7 49,557 + -0.8 49,565 - -2.0 49,565 - -1.5 49,579 + -2.7 49,621 + -0.9 49,621 + -2.0 49,621 + -1.2 49,621 + -1.8 49,629 + +1.2 49,768 + +0.1 49,768 + -1.6 49,768 + -3.1 49,776 - -0.4 49,776 - +0.3 49,776 - -1.8 49,776 - -0.6 49,776 - -0.4 49,776 - -1.9 49,776 - -1.2 49,782 - +0.7 49,801 + -0.1 49,801 + +1.9 49,869 - SOA0061 0.18 +0.5 49,880 - SOA0061 0.20 -2.7 49,882 + SOA0061 0.20 -1.0 49,882 + SOA0061 0.20 -0.9 49,882 + SOA0061 0.20 +0.1 49,953 + SOA0061 0.30 -0.5 49,958 + SOA0061 0.31 +1.7 49,958 + SOA0061 0.31 -1.5 49,958 + SOA0061 0.31 -1.3 49,958 + SOA0061 0.31 +1.7 49,958 + SOA0061 0.31 +2.1 49,958 + SOA0061 0.31 -0.1 49,966 - SOA0061 0.32 -0.6
Or see this region's nucleotide sequence