Strain Fitness in Shewanella oneidensis MR-1 around SOA0059

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0058 and SOA0059 are separated by 749 nucleotidesSOA0059 and SOA0060 are separated by 3 nucleotidesSOA0060 and SOA0061 are separated by 186 nucleotides SO_A0058: SO_A0058 - hypothetical protein (NCBI), at 47,238 to 47,987 _A0058 SOA0059: SOA0059 - conserved hypothetical protein (NCBI ptt file), at 48,737 to 49,027 SOA0059 SOA0060: SOA0060 - acetyltransferase, GNAT family (NCBI ptt file), at 49,031 to 49,558 SOA0060 SOA0061: SOA0061 - parA protein, putative (NCBI ptt file), at 49,745 to 50,431 SOA0061 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.312 kb on + strandat 48.334 kb on + strandat 48.334 kb on + strandat 48.334 kb on + strandat 48.341 kb on - strandat 48.358 kb on + strandat 48.461 kb on + strandat 48.713 kb on + strandat 48.744 kb on + strandat 48.774 kb on - strand, within SOA0059at 48.774 kb on - strand, within SOA0059at 48.927 kb on + strand, within SOA0059at 48.935 kb on - strand, within SOA0059at 49.000 kb on - strandat 49.035 kb on + strandat 49.043 kb on - strandat 49.049 kb on - strandat 49.052 kb on - strandat 49.061 kb on - strandat 49.063 kb on + strandat 49.173 kb on + strand, within SOA0060at 49.174 kb on + strand, within SOA0060at 49.174 kb on + strand, within SOA0060at 49.174 kb on + strand, within SOA0060at 49.184 kb on + strand, within SOA0060at 49.196 kb on + strand, within SOA0060at 49.196 kb on + strand, within SOA0060at 49.202 kb on + strand, within SOA0060at 49.202 kb on + strand, within SOA0060at 49.203 kb on - strand, within SOA0060at 49.203 kb on - strand, within SOA0060at 49.203 kb on - strand, within SOA0060at 49.211 kb on - strand, within SOA0060at 49.237 kb on + strand, within SOA0060at 49.239 kb on + strand, within SOA0060at 49.265 kb on + strand, within SOA0060at 49.273 kb on - strand, within SOA0060at 49.297 kb on - strand, within SOA0060at 49.379 kb on + strand, within SOA0060at 49.379 kb on + strand, within SOA0060at 49.379 kb on + strand, within SOA0060at 49.379 kb on + strand, within SOA0060at 49.387 kb on - strand, within SOA0060at 49.387 kb on - strand, within SOA0060at 49.409 kb on + strand, within SOA0060at 49.410 kb on - strand, within SOA0060at 49.429 kb on + strand, within SOA0060at 49.429 kb on + strand, within SOA0060at 49.429 kb on + strand, within SOA0060at 49.429 kb on + strand, within SOA0060at 49.429 kb on + strand, within SOA0060at 49.430 kb on - strand, within SOA0060at 49.432 kb on - strand, within SOA0060at 49.437 kb on - strand, within SOA0060at 49.437 kb on - strand, within SOA0060at 49.462 kb on - strand, within SOA0060at 49.462 kb on - strand, within SOA0060at 49.493 kb on + strand, within SOA0060at 49.493 kb on + strand, within SOA0060at 49.505 kb on + strand, within SOA0060at 49.556 kb on - strandat 49.557 kb on + strandat 49.565 kb on - strandat 49.565 kb on - strandat 49.579 kb on + strandat 49.621 kb on + strandat 49.621 kb on + strandat 49.621 kb on + strandat 49.621 kb on + strandat 49.629 kb on + strandat 49.768 kb on + strandat 49.768 kb on + strandat 49.768 kb on + strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.776 kb on - strandat 49.782 kb on - strandat 49.801 kb on + strandat 49.801 kb on + strandat 49.869 kb on - strand, within SOA0061at 49.880 kb on - strand, within SOA0061at 49.882 kb on + strand, within SOA0061at 49.882 kb on + strand, within SOA0061at 49.882 kb on + strand, within SOA0061at 49.953 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.958 kb on + strand, within SOA0061at 49.966 kb on - strand, within SOA0061

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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48,312 + +3.6
48,334 + -1.5
48,334 + -1.9
48,334 + +0.1
48,341 - -1.0
48,358 + -0.3
48,461 + -1.1
48,713 + -1.2
48,744 + +0.7
48,774 - SOA0059 0.13 -3.7
48,774 - SOA0059 0.13 +1.1
48,927 + SOA0059 0.65 -2.1
48,935 - SOA0059 0.68 -1.1
49,000 - -2.8
49,035 + +0.6
49,043 - +2.9
49,049 - +3.7
49,052 - -3.6
49,061 - +0.4
49,063 + +3.6
49,173 + SOA0060 0.27 -1.2
49,174 + SOA0060 0.27 +1.8
49,174 + SOA0060 0.27 +0.3
49,174 + SOA0060 0.27 -1.5
49,184 + SOA0060 0.29 -0.0
49,196 + SOA0060 0.31 -2.2
49,196 + SOA0060 0.31 -2.0
49,202 + SOA0060 0.32 -1.4
49,202 + SOA0060 0.32 -2.3
49,203 - SOA0060 0.33 -1.2
49,203 - SOA0060 0.33 -0.9
49,203 - SOA0060 0.33 +0.2
49,211 - SOA0060 0.34 -0.9
49,237 + SOA0060 0.39 +2.8
49,239 + SOA0060 0.39 +0.4
49,265 + SOA0060 0.44 -3.5
49,273 - SOA0060 0.46 +0.0
49,297 - SOA0060 0.50 -0.7
49,379 + SOA0060 0.66 -2.2
49,379 + SOA0060 0.66 -0.4
49,379 + SOA0060 0.66 -2.2
49,379 + SOA0060 0.66 +0.4
49,387 - SOA0060 0.67 -1.8
49,387 - SOA0060 0.67 +0.2
49,409 + SOA0060 0.72 -2.0
49,410 - SOA0060 0.72 -1.6
49,429 + SOA0060 0.75 -1.8
49,429 + SOA0060 0.75 +1.2
49,429 + SOA0060 0.75 +0.1
49,429 + SOA0060 0.75 -3.4
49,429 + SOA0060 0.75 +0.6
49,430 - SOA0060 0.76 +0.1
49,432 - SOA0060 0.76 +2.0
49,437 - SOA0060 0.77 -3.6
49,437 - SOA0060 0.77 -1.8
49,462 - SOA0060 0.82 -0.9
49,462 - SOA0060 0.82 +0.7
49,493 + SOA0060 0.88 -0.9
49,493 + SOA0060 0.88 -1.3
49,505 + SOA0060 0.90 -0.1
49,556 - +0.7
49,557 + -0.8
49,565 - -2.0
49,565 - -1.5
49,579 + -2.7
49,621 + -0.9
49,621 + -2.0
49,621 + -1.2
49,621 + -1.8
49,629 + +1.2
49,768 + +0.1
49,768 + -1.6
49,768 + -3.1
49,776 - -0.4
49,776 - +0.3
49,776 - -1.8
49,776 - -0.6
49,776 - -0.4
49,776 - -1.9
49,776 - -1.2
49,782 - +0.7
49,801 + -0.1
49,801 + +1.9
49,869 - SOA0061 0.18 +0.5
49,880 - SOA0061 0.20 -2.7
49,882 + SOA0061 0.20 -1.0
49,882 + SOA0061 0.20 -0.9
49,882 + SOA0061 0.20 +0.1
49,953 + SOA0061 0.30 -0.5
49,958 + SOA0061 0.31 +1.7
49,958 + SOA0061 0.31 -1.5
49,958 + SOA0061 0.31 -1.3
49,958 + SOA0061 0.31 +1.7
49,958 + SOA0061 0.31 +2.1
49,958 + SOA0061 0.31 -0.1
49,966 - SOA0061 0.32 -0.6

Or see this region's nucleotide sequence