Strain Fitness in Shewanella oneidensis MR-1 around SO4739

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4737 and SO4738 are separated by 91 nucleotidesSO4738 and menB are separated by 118 nucleotidesmenB and SO4740 are separated by 167 nucleotidesSO4740 and glmS are separated by 80 nucleotides SO4737: SO4737 - iron-sulfur cluster-binding protein (NCBI ptt file), at 4,948,026 to 4,949,453 SO4737 SO4738: SO4738 - hypothetical protein (NCBI ptt file), at 4,949,545 to 4,949,895 SO4738 SO4739: menB - naphthoate synthase (NCBI ptt file), at 4,950,014 to 4,950,916 menB SO4740: SO4740 - conserved hypothetical protein (NCBI ptt file), at 4,951,084 to 4,951,287 SO4740 SO4741: glmS - glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (NCBI ptt file), at 4,951,368 to 4,953,197 glmS Position (kb) 4950 4951Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4949.029 kb on + strand, within SO4737at 4949.037 kb on - strand, within SO4737at 4949.093 kb on - strand, within SO4737at 4949.093 kb on - strand, within SO4737at 4949.146 kb on + strand, within SO4737at 4949.156 kb on - strand, within SO4737at 4949.156 kb on - strand, within SO4737at 4949.176 kb on - strand, within SO4737at 4949.177 kb on - strand, within SO4737at 4949.225 kb on + strand, within SO4737at 4949.228 kb on - strand, within SO4737at 4949.228 kb on - strand, within SO4737at 4949.233 kb on - strand, within SO4737at 4949.237 kb on - strand, within SO4737at 4949.260 kb on + strand, within SO4737at 4949.293 kb on + strand, within SO4737at 4949.293 kb on + strand, within SO4737at 4949.322 kb on + strandat 4949.328 kb on + strandat 4949.328 kb on - strandat 4949.384 kb on - strandat 4949.385 kb on - strandat 4949.385 kb on - strandat 4949.425 kb on - strandat 4949.469 kb on - strandat 4949.469 kb on - strandat 4949.512 kb on + strandat 4949.519 kb on + strandat 4949.579 kb on - strandat 4949.584 kb on + strand, within SO4738at 4949.655 kb on - strand, within SO4738at 4949.730 kb on + strand, within SO4738at 4949.730 kb on + strand, within SO4738at 4949.730 kb on + strand, within SO4738at 4949.738 kb on - strand, within SO4738at 4949.738 kb on - strand, within SO4738at 4949.753 kb on - strand, within SO4738at 4949.759 kb on + strand, within SO4738at 4949.842 kb on - strand, within SO4738at 4949.845 kb on + strand, within SO4738at 4949.853 kb on - strand, within SO4738at 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.889 kb on + strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.897 kb on - strandat 4949.901 kb on + strandat 4949.901 kb on + strandat 4949.909 kb on - strandat 4949.933 kb on + strandat 4949.951 kb on - strandat 4949.979 kb on + strandat 4949.981 kb on + strandat 4949.981 kb on + strandat 4949.989 kb on - strandat 4949.996 kb on + strandat 4950.016 kb on + strandat 4950.024 kb on - strandat 4950.034 kb on - strandat 4950.069 kb on + strandat 4950.069 kb on + strandat 4950.069 kb on + strandat 4950.076 kb on - strandat 4950.076 kb on - strandat 4950.094 kb on + strandat 4950.102 kb on - strandat 4950.107 kb on + strand, within menBat 4950.114 kb on + strand, within menBat 4950.115 kb on - strand, within menBat 4950.115 kb on - strand, within menBat 4950.129 kb on - strand, within menBat 4950.181 kb on + strand, within menBat 4950.181 kb on + strand, within menBat 4950.231 kb on - strand, within menBat 4950.236 kb on - strand, within menBat 4950.350 kb on + strand, within menBat 4950.363 kb on - strand, within menBat 4950.431 kb on + strand, within menBat 4950.446 kb on - strand, within menBat 4950.452 kb on + strand, within menBat 4950.486 kb on + strand, within menBat 4950.551 kb on + strand, within menBat 4950.551 kb on + strand, within menBat 4950.551 kb on + strand, within menBat 4950.551 kb on + strand, within menBat 4950.551 kb on + strand, within menBat 4950.559 kb on - strand, within menBat 4950.559 kb on - strand, within menBat 4950.561 kb on + strand, within menBat 4950.569 kb on - strand, within menBat 4950.569 kb on - strand, within menBat 4950.698 kb on + strand, within menBat 4950.698 kb on + strand, within menBat 4950.698 kb on + strand, within menBat 4950.770 kb on - strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.821 kb on + strand, within menBat 4950.827 kb on + strandat 4950.827 kb on + strandat 4950.827 kb on + strandat 4950.827 kb on + strandat 4950.827 kb on + strandat 4950.827 kb on + strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.829 kb on - strandat 4950.835 kb on - strandat 4950.835 kb on - strandat 4950.835 kb on - strandat 4950.856 kb on + strandat 4950.889 kb on + strandat 4950.894 kb on - strandat 4950.954 kb on - strandat 4950.954 kb on - strandat 4950.961 kb on - strandat 4951.067 kb on + strandat 4951.075 kb on - strandat 4951.157 kb on + strand, within SO4740at 4951.162 kb on - strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.181 kb on + strand, within SO4740at 4951.189 kb on - strand, within SO4740at 4951.189 kb on - strand, within SO4740at 4951.189 kb on - strand, within SO4740at 4951.280 kb on + strandat 4951.290 kb on + strandat 4951.290 kb on + strandat 4951.298 kb on - strandat 4951.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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4,949,029 + SO4737 0.70 +1.5
4,949,037 - SO4737 0.71 +0.8
4,949,093 - SO4737 0.75 +3.0
4,949,093 - SO4737 0.75 +2.1
4,949,146 + SO4737 0.78 +2.2
4,949,156 - SO4737 0.79 +1.0
4,949,156 - SO4737 0.79 -1.0
4,949,176 - SO4737 0.81 -2.0
4,949,177 - SO4737 0.81 -0.1
4,949,225 + SO4737 0.84 +0.7
4,949,228 - SO4737 0.84 +0.2
4,949,228 - SO4737 0.84 +0.2
4,949,233 - SO4737 0.85 +0.3
4,949,237 - SO4737 0.85 +2.3
4,949,260 + SO4737 0.86 +1.7
4,949,293 + SO4737 0.89 +1.0
4,949,293 + SO4737 0.89 +0.5
4,949,322 + +0.9
4,949,328 + +1.2
4,949,328 - +3.9
4,949,384 - +1.3
4,949,385 - +1.6
4,949,385 - -0.4
4,949,425 - +1.2
4,949,469 - +0.6
4,949,469 - -0.3
4,949,512 + -2.3
4,949,519 + +1.0
4,949,579 - +0.4
4,949,584 + SO4738 0.11 +2.3
4,949,655 - SO4738 0.31 -1.5
4,949,730 + SO4738 0.53 -0.7
4,949,730 + SO4738 0.53 -2.1
4,949,730 + SO4738 0.53 -0.1
4,949,738 - SO4738 0.55 -0.7
4,949,738 - SO4738 0.55 -2.2
4,949,753 - SO4738 0.59 +1.1
4,949,759 + SO4738 0.61 +1.9
4,949,842 - SO4738 0.85 +0.4
4,949,845 + SO4738 0.85 -0.6
4,949,853 - SO4738 0.88 -2.0
4,949,889 + +0.4
4,949,889 + +0.4
4,949,889 + +0.9
4,949,889 + +0.8
4,949,889 + +2.7
4,949,889 + +2.2
4,949,889 + -1.9
4,949,889 + +0.8
4,949,889 + -0.3
4,949,897 - -1.7
4,949,897 - +0.2
4,949,897 - +0.6
4,949,897 - -1.3
4,949,897 - +1.4
4,949,897 - +1.7
4,949,897 - +2.1
4,949,897 - +0.9
4,949,901 + +0.1
4,949,901 + +1.7
4,949,909 - -0.8
4,949,933 + -0.2
4,949,951 - +0.8
4,949,979 + -1.2
4,949,981 + -1.6
4,949,981 + +0.8
4,949,989 - -2.0
4,949,996 + +1.1
4,950,016 + -3.7
4,950,024 - -1.7
4,950,034 - -1.4
4,950,069 + -2.7
4,950,069 + -0.6
4,950,069 + -2.6
4,950,076 - -0.6
4,950,076 - +1.0
4,950,094 + -2.0
4,950,102 - -1.0
4,950,107 + menB SO4739 0.10 -0.2
4,950,114 + menB SO4739 0.11 -1.8
4,950,115 - menB SO4739 0.11 -0.2
4,950,115 - menB SO4739 0.11 -3.7
4,950,129 - menB SO4739 0.13 -0.2
4,950,181 + menB SO4739 0.18 -0.8
4,950,181 + menB SO4739 0.18 -1.8
4,950,231 - menB SO4739 0.24 -2.8
4,950,236 - menB SO4739 0.25 -2.2
4,950,350 + menB SO4739 0.37 -1.4
4,950,363 - menB SO4739 0.39 -2.2
4,950,431 + menB SO4739 0.46 -1.0
4,950,446 - menB SO4739 0.48 -0.8
4,950,452 + menB SO4739 0.49 -1.0
4,950,486 + menB SO4739 0.52 -0.6
4,950,551 + menB SO4739 0.59 -2.8
4,950,551 + menB SO4739 0.59 -3.6
4,950,551 + menB SO4739 0.59 -3.7
4,950,551 + menB SO4739 0.59 -0.2
4,950,551 + menB SO4739 0.59 -1.2
4,950,559 - menB SO4739 0.60 +3.9
4,950,559 - menB SO4739 0.60 -2.1
4,950,561 + menB SO4739 0.61 -2.4
4,950,569 - menB SO4739 0.61 -1.1
4,950,569 - menB SO4739 0.61 -0.2
4,950,698 + menB SO4739 0.76 -1.0
4,950,698 + menB SO4739 0.76 -1.2
4,950,698 + menB SO4739 0.76 -1.3
4,950,770 - menB SO4739 0.84 -2.8
4,950,821 + menB SO4739 0.89 -1.3
4,950,821 + menB SO4739 0.89 -2.6
4,950,821 + menB SO4739 0.89 -0.6
4,950,821 + menB SO4739 0.89 +0.9
4,950,821 + menB SO4739 0.89 -0.6
4,950,821 + menB SO4739 0.89 +0.2
4,950,821 + menB SO4739 0.89 +0.2
4,950,827 + -1.7
4,950,827 + -1.7
4,950,827 + -0.2
4,950,827 + -1.8
4,950,827 + +2.0
4,950,827 + -2.7
4,950,829 - -1.4
4,950,829 - -1.8
4,950,829 - -2.1
4,950,829 - -1.0
4,950,829 - -0.8
4,950,829 - +3.4
4,950,829 - -0.8
4,950,829 - -1.4
4,950,829 - -0.3
4,950,829 - +0.8
4,950,829 - -0.5
4,950,835 - -2.0
4,950,835 - -2.0
4,950,835 - -0.2
4,950,856 + -1.0
4,950,889 + -0.8
4,950,894 - -1.1
4,950,954 - -1.1
4,950,954 - +0.2
4,950,961 - +3.7
4,951,067 + +0.2
4,951,075 - -1.0
4,951,157 + SO4740 0.36 +0.3
4,951,162 - SO4740 0.38 -0.5
4,951,181 + SO4740 0.48 +1.7
4,951,181 + SO4740 0.48 +2.5
4,951,181 + SO4740 0.48 -0.4
4,951,181 + SO4740 0.48 -1.5
4,951,181 + SO4740 0.48 +0.1
4,951,181 + SO4740 0.48 +0.8
4,951,181 + SO4740 0.48 +2.0
4,951,181 + SO4740 0.48 -1.4
4,951,181 + SO4740 0.48 -2.3
4,951,189 - SO4740 0.51 -0.6
4,951,189 - SO4740 0.51 +1.2
4,951,189 - SO4740 0.51 -0.7
4,951,280 + +0.2
4,951,290 + +0.1
4,951,290 + -0.4
4,951,298 - +0.8
4,951,298 - -0.2

Or see this region's nucleotide sequence