Strain Fitness in Shewanella oneidensis MR-1 around SO3408

Experiment: Fumarate electron acceptor; ground control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO3407 and SO3408 overlap by 4 nucleotidesSO3408 and SO3409 are separated by 113 nucleotidesSO3409 and SO3410 are separated by 141 nucleotides SO3407: SO3407 - conserved hypothetical protein (NCBI ptt file), at 3,544,677 to 3,546,356 SO3407 SO3408: SO3408 - conserved hypothetical protein (NCBI ptt file), at 3,546,353 to 3,546,706 SO3408 SO3409: SO3409 - OsmC/Ohr family protein (NCBI ptt file), at 3,546,820 to 3,547,257 SO3409 SO3410: SO3410 - hypothetical protein (NCBI ptt file), at 3,547,399 to 3,547,827 SO3410 Position (kb) 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3545.498 kb on - strand, within SO3407at 3545.667 kb on + strand, within SO3407at 3545.701 kb on - strand, within SO3407at 3545.781 kb on + strand, within SO3407at 3545.782 kb on + strand, within SO3407at 3545.790 kb on - strand, within SO3407at 3545.871 kb on + strand, within SO3407at 3546.073 kb on - strand, within SO3407at 3546.077 kb on + strand, within SO3407at 3546.077 kb on + strand, within SO3407at 3546.077 kb on + strand, within SO3407at 3546.077 kb on + strand, within SO3407at 3546.079 kb on + strand, within SO3407at 3546.085 kb on - strand, within SO3407at 3546.085 kb on - strand, within SO3407at 3546.087 kb on - strand, within SO3407at 3546.096 kb on - strand, within SO3407at 3546.111 kb on - strand, within SO3407at 3546.195 kb on + strandat 3546.230 kb on + strandat 3546.413 kb on - strand, within SO3408at 3546.421 kb on - strand, within SO3408at 3546.457 kb on - strand, within SO3408at 3546.673 kb on - strandat 3546.673 kb on - strandat 3546.778 kb on - strandat 3546.793 kb on + strandat 3546.795 kb on + strandat 3546.798 kb on - strandat 3546.816 kb on - strandat 3546.857 kb on - strandat 3546.898 kb on - strand, within SO3409at 3546.916 kb on + strand, within SO3409at 3546.945 kb on - strand, within SO3409at 3546.989 kb on - strand, within SO3409at 3547.006 kb on + strand, within SO3409at 3547.038 kb on - strand, within SO3409at 3547.048 kb on + strand, within SO3409at 3547.056 kb on - strand, within SO3409at 3547.096 kb on - strand, within SO3409at 3547.277 kb on + strandat 3547.298 kb on + strandat 3547.335 kb on + strandat 3547.513 kb on - strand, within SO3410at 3547.524 kb on + strand, within SO3410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
remove
3,545,498 - SO3407 0.49 -1.1
3,545,667 + SO3407 0.59 +0.8
3,545,701 - SO3407 0.61 +3.5
3,545,781 + SO3407 0.66 -1.7
3,545,782 + SO3407 0.66 +2.7
3,545,790 - SO3407 0.66 +0.7
3,545,871 + SO3407 0.71 -3.2
3,546,073 - SO3407 0.83 +1.3
3,546,077 + SO3407 0.83 -1.6
3,546,077 + SO3407 0.83 +0.8
3,546,077 + SO3407 0.83 +0.4
3,546,077 + SO3407 0.83 +4.1
3,546,079 + SO3407 0.83 +1.3
3,546,085 - SO3407 0.84 +1.4
3,546,085 - SO3407 0.84 +1.5
3,546,087 - SO3407 0.84 +1.2
3,546,096 - SO3407 0.84 +2.8
3,546,111 - SO3407 0.85 -3.2
3,546,195 + -1.8
3,546,230 + +0.8
3,546,413 - SO3408 0.17 -1.4
3,546,421 - SO3408 0.19 -1.2
3,546,457 - SO3408 0.29 +1.2
3,546,673 - -1.1
3,546,673 - +3.4
3,546,778 - +0.3
3,546,793 + +1.3
3,546,795 + +0.2
3,546,798 - +1.4
3,546,816 - +0.2
3,546,857 - +0.5
3,546,898 - SO3409 0.18 -2.9
3,546,916 + SO3409 0.22 -1.8
3,546,945 - SO3409 0.29 -0.4
3,546,989 - SO3409 0.39 +0.1
3,547,006 + SO3409 0.42 -0.3
3,547,038 - SO3409 0.50 -0.1
3,547,048 + SO3409 0.52 -0.2
3,547,056 - SO3409 0.54 -1.2
3,547,096 - SO3409 0.63 -0.5
3,547,277 + -2.5
3,547,298 + -1.4
3,547,335 + +0.2
3,547,513 - SO3410 0.27 +1.1
3,547,524 + SO3410 0.29 +0.4

Or see this region's nucleotide sequence