Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3407 and SO3408 overlap by 4 nucleotides SO3408 and SO3409 are separated by 113 nucleotides SO3409 and SO3410 are separated by 141 nucleotides
SO3407: SO3407 - conserved hypothetical protein (NCBI ptt file), at 3,544,677 to 3,546,356
SO3407
SO3408: SO3408 - conserved hypothetical protein (NCBI ptt file), at 3,546,353 to 3,546,706
SO3408
SO3409: SO3409 - OsmC/Ohr family protein (NCBI ptt file), at 3,546,820 to 3,547,257
SO3409
SO3410: SO3410 - hypothetical protein (NCBI ptt file), at 3,547,399 to 3,547,827
SO3410
Position (kb)
3546
3547 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3545.498 kb on - strand, within SO3407 at 3545.667 kb on + strand, within SO3407 at 3545.701 kb on - strand, within SO3407 at 3545.781 kb on + strand, within SO3407 at 3545.782 kb on + strand, within SO3407 at 3545.790 kb on - strand, within SO3407 at 3545.871 kb on + strand, within SO3407 at 3546.073 kb on - strand, within SO3407 at 3546.077 kb on + strand, within SO3407 at 3546.077 kb on + strand, within SO3407 at 3546.077 kb on + strand, within SO3407 at 3546.077 kb on + strand, within SO3407 at 3546.079 kb on + strand, within SO3407 at 3546.085 kb on - strand, within SO3407 at 3546.085 kb on - strand, within SO3407 at 3546.087 kb on - strand, within SO3407 at 3546.096 kb on - strand, within SO3407 at 3546.111 kb on - strand, within SO3407 at 3546.195 kb on + strand at 3546.230 kb on + strand at 3546.413 kb on - strand, within SO3408 at 3546.421 kb on - strand, within SO3408 at 3546.457 kb on - strand, within SO3408 at 3546.673 kb on - strand at 3546.673 kb on - strand at 3546.778 kb on - strand at 3546.793 kb on + strand at 3546.795 kb on + strand at 3546.798 kb on - strand at 3546.816 kb on - strand at 3546.857 kb on - strand at 3546.898 kb on - strand, within SO3409 at 3546.916 kb on + strand, within SO3409 at 3546.945 kb on - strand, within SO3409 at 3546.989 kb on - strand, within SO3409 at 3547.006 kb on + strand, within SO3409 at 3547.038 kb on - strand, within SO3409 at 3547.048 kb on + strand, within SO3409 at 3547.056 kb on - strand, within SO3409 at 3547.096 kb on - strand, within SO3409 at 3547.277 kb on + strand at 3547.298 kb on + strand at 3547.335 kb on + strand at 3547.513 kb on - strand, within SO3410 at 3547.524 kb on + strand, within SO3410
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 3,545,498 - SO3407 0.49 -1.1 3,545,667 + SO3407 0.59 +0.8 3,545,701 - SO3407 0.61 +3.5 3,545,781 + SO3407 0.66 -1.7 3,545,782 + SO3407 0.66 +2.7 3,545,790 - SO3407 0.66 +0.7 3,545,871 + SO3407 0.71 -3.2 3,546,073 - SO3407 0.83 +1.3 3,546,077 + SO3407 0.83 -1.6 3,546,077 + SO3407 0.83 +0.8 3,546,077 + SO3407 0.83 +0.4 3,546,077 + SO3407 0.83 +4.1 3,546,079 + SO3407 0.83 +1.3 3,546,085 - SO3407 0.84 +1.4 3,546,085 - SO3407 0.84 +1.5 3,546,087 - SO3407 0.84 +1.2 3,546,096 - SO3407 0.84 +2.8 3,546,111 - SO3407 0.85 -3.2 3,546,195 + -1.8 3,546,230 + +0.8 3,546,413 - SO3408 0.17 -1.4 3,546,421 - SO3408 0.19 -1.2 3,546,457 - SO3408 0.29 +1.2 3,546,673 - -1.1 3,546,673 - +3.4 3,546,778 - +0.3 3,546,793 + +1.3 3,546,795 + +0.2 3,546,798 - +1.4 3,546,816 - +0.2 3,546,857 - +0.5 3,546,898 - SO3409 0.18 -2.9 3,546,916 + SO3409 0.22 -1.8 3,546,945 - SO3409 0.29 -0.4 3,546,989 - SO3409 0.39 +0.1 3,547,006 + SO3409 0.42 -0.3 3,547,038 - SO3409 0.50 -0.1 3,547,048 + SO3409 0.52 -0.2 3,547,056 - SO3409 0.54 -1.2 3,547,096 - SO3409 0.63 -0.5 3,547,277 + -2.5 3,547,298 + -1.4 3,547,335 + +0.2 3,547,513 - SO3410 0.27 +1.1 3,547,524 + SO3410 0.29 +0.4
Or see this region's nucleotide sequence