Strain Fitness in Shewanella oneidensis MR-1 around SO3402

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3401 and SO3402 are separated by 64 nucleotidesSO3402 and yfiA-1 are separated by 416 nucleotides SO3401: SO3401 - conserved hypothetical protein TIGR01033 (NCBI ptt file), at 3,540,438 to 3,541,160 SO3401 SO3402: SO3402 - hypothetical protein (NCBI ptt file), at 3,541,225 to 3,541,353 SO3402 SO3403: yfiA-1 - ribosomal subunit interface protein (NCBI ptt file), at 3,541,770 to 3,542,126 yfiA-1 Position (kb) 3541 3542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3540.236 kb on - strandat 3540.238 kb on + strandat 3540.238 kb on - strandat 3540.244 kb on + strandat 3540.261 kb on - strandat 3540.261 kb on - strandat 3540.440 kb on + strandat 3540.440 kb on + strandat 3540.458 kb on - strandat 3540.569 kb on - strand, within SO3401at 3540.612 kb on + strand, within SO3401at 3540.626 kb on - strand, within SO3401at 3540.647 kb on + strand, within SO3401at 3540.648 kb on + strand, within SO3401at 3540.728 kb on + strand, within SO3401at 3540.738 kb on - strand, within SO3401at 3540.757 kb on + strand, within SO3401at 3540.757 kb on + strand, within SO3401at 3540.768 kb on + strand, within SO3401at 3540.775 kb on - strand, within SO3401at 3540.808 kb on - strand, within SO3401at 3540.814 kb on + strand, within SO3401at 3541.049 kb on - strand, within SO3401at 3541.237 kb on - strandat 3541.255 kb on + strand, within SO3402at 3541.263 kb on - strand, within SO3402at 3541.351 kb on + strandat 3541.383 kb on - strandat 3541.605 kb on + strandat 3541.605 kb on + strandat 3541.649 kb on - strandat 3541.752 kb on + strandat 3541.851 kb on + strand, within yfiA-1at 3542.066 kb on - strand, within yfiA-1at 3542.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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3,540,236 - +0.8
3,540,238 + -0.7
3,540,238 - -1.9
3,540,244 + -0.5
3,540,261 - -1.7
3,540,261 - +0.1
3,540,440 + +0.1
3,540,440 + +1.8
3,540,458 - +0.3
3,540,569 - SO3401 0.18 -0.8
3,540,612 + SO3401 0.24 -0.7
3,540,626 - SO3401 0.26 -0.4
3,540,647 + SO3401 0.29 +0.1
3,540,648 + SO3401 0.29 +1.6
3,540,728 + SO3401 0.40 +0.1
3,540,738 - SO3401 0.41 -3.7
3,540,757 + SO3401 0.44 +1.5
3,540,757 + SO3401 0.44 -1.6
3,540,768 + SO3401 0.46 -0.4
3,540,775 - SO3401 0.47 -2.9
3,540,808 - SO3401 0.51 -0.7
3,540,814 + SO3401 0.52 +0.8
3,541,049 - SO3401 0.85 -1.0
3,541,237 - +0.0
3,541,255 + SO3402 0.23 -1.8
3,541,263 - SO3402 0.29 -2.6
3,541,351 + -0.7
3,541,383 - -0.3
3,541,605 + -0.8
3,541,605 + +0.2
3,541,649 - +1.8
3,541,752 + -1.5
3,541,851 + yfiA-1 SO3403 0.23 +1.2
3,542,066 - yfiA-1 SO3403 0.83 -3.2
3,542,114 + -0.8

Or see this region's nucleotide sequence