Strain Fitness in Shewanella oneidensis MR-1 around SO3126

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3125 and ogt are separated by 37 nucleotidesogt and SO3127 are separated by 105 nucleotides SO3125: SO3125 - ATP-dependent RNA helicase, DEAD box family (NCBI ptt file), at 3,252,401 to 3,253,684 SO3125 SO3126: ogt - methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file), at 3,253,722 to 3,254,225 ogt SO3127: SO3127 - Ada regulatory protein, putative (NCBI ptt file), at 3,254,331 to 3,255,959 SO3127 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3252.815 kb on + strand, within SO3125at 3252.833 kb on + strand, within SO3125at 3252.836 kb on + strand, within SO3125at 3253.121 kb on + strand, within SO3125at 3253.139 kb on - strand, within SO3125at 3253.338 kb on + strand, within SO3125at 3253.440 kb on - strand, within SO3125at 3253.456 kb on - strand, within SO3125at 3253.582 kb on - strandat 3253.582 kb on - strandat 3253.589 kb on + strandat 3253.589 kb on + strandat 3253.886 kb on + strand, within ogtat 3253.897 kb on + strand, within ogtat 3254.038 kb on + strand, within ogtat 3254.230 kb on - strandat 3254.456 kb on + strandat 3254.458 kb on + strandat 3254.519 kb on + strand, within SO3127at 3254.566 kb on + strand, within SO3127at 3254.566 kb on + strand, within SO3127at 3254.566 kb on + strand, within SO3127at 3254.613 kb on + strand, within SO3127at 3254.670 kb on + strand, within SO3127at 3254.802 kb on - strand, within SO3127at 3254.866 kb on + strand, within SO3127at 3254.990 kb on + strand, within SO3127at 3255.022 kb on - strand, within SO3127at 3255.103 kb on + strand, within SO3127at 3255.113 kb on + strand, within SO3127at 3255.220 kb on + strand, within SO3127at 3255.220 kb on + strand, within SO3127

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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3,252,815 + SO3125 0.32 +0.6
3,252,833 + SO3125 0.34 +1.2
3,252,836 + SO3125 0.34 +1.4
3,253,121 + SO3125 0.56 -0.7
3,253,139 - SO3125 0.57 +0.3
3,253,338 + SO3125 0.73 -2.1
3,253,440 - SO3125 0.81 -2.8
3,253,456 - SO3125 0.82 +0.2
3,253,582 - +0.2
3,253,582 - -2.1
3,253,589 + +0.7
3,253,589 + -3.9
3,253,886 + ogt SO3126 0.33 -2.1
3,253,897 + ogt SO3126 0.35 -2.0
3,254,038 + ogt SO3126 0.63 -1.0
3,254,230 - +0.3
3,254,456 + +1.0
3,254,458 + +0.3
3,254,519 + SO3127 0.12 +1.8
3,254,566 + SO3127 0.14 +0.3
3,254,566 + SO3127 0.14 -1.0
3,254,566 + SO3127 0.14 +1.6
3,254,613 + SO3127 0.17 +3.0
3,254,670 + SO3127 0.21 -1.1
3,254,802 - SO3127 0.29 +1.0
3,254,866 + SO3127 0.33 -1.1
3,254,990 + SO3127 0.40 -0.7
3,255,022 - SO3127 0.42 -1.6
3,255,103 + SO3127 0.47 -1.5
3,255,113 + SO3127 0.48 -1.4
3,255,220 + SO3127 0.55 -1.4
3,255,220 + SO3127 0.55 +2.6

Or see this region's nucleotide sequence