Strain Fitness in Shewanella oneidensis MR-1 around SO2828

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_2824 and SO2827 are separated by 420 nucleotidesSO2827 and SO2828 are separated by 2 nucleotidesSO2828 and SO2829 are separated by 22 nucleotidesSO2829 and SO2830 are separated by 68 nucleotides SO_2824: SO_2824 - no description, at 2,946,237 to 2,946,491 _2824 SO2827: SO2827 - conserved hypothetical protein (NCBI ptt file), at 2,946,912 to 2,947,283 SO2827 SO2828: SO2828 - hypothetical protein (NCBI ptt file), at 2,947,286 to 2,947,474 SO2828 SO2829: SO2829 - conserved domain protein (NCBI ptt file), at 2,947,497 to 2,947,946 SO2829 SO2830: SO2830 - hypothetical protein (NCBI ptt file), at 2,948,015 to 2,948,953 SO2830 Position (kb) 2947 2948Strain fitness (log2 ratio) -2 -1 0 1 2at 2946.294 kb on - strand, within SO_2824at 2946.363 kb on + strand, within SO_2824at 2946.513 kb on - strandat 2946.850 kb on + strandat 2946.858 kb on - strandat 2946.858 kb on - strandat 2946.928 kb on + strandat 2946.988 kb on + strand, within SO2827at 2947.236 kb on + strand, within SO2827at 2947.258 kb on - strandat 2947.334 kb on - strand, within SO2828at 2947.482 kb on + strandat 2947.502 kb on - strandat 2947.618 kb on - strand, within SO2829at 2947.671 kb on - strand, within SO2829at 2948.000 kb on + strandat 2948.008 kb on - strandat 2948.094 kb on - strandat 2948.266 kb on - strand, within SO2830at 2948.365 kb on + strand, within SO2830at 2948.375 kb on + strand, within SO2830at 2948.375 kb on + strand, within SO2830

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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2,946,294 - SO_2824 0.22 +0.1
2,946,363 + SO_2824 0.49 -1.9
2,946,513 - -1.0
2,946,850 + +1.4
2,946,858 - +2.3
2,946,858 - -1.2
2,946,928 + -0.6
2,946,988 + SO2827 0.20 +0.0
2,947,236 + SO2827 0.87 +2.2
2,947,258 - -0.6
2,947,334 - SO2828 0.25 -1.1
2,947,482 + +0.6
2,947,502 - -1.6
2,947,618 - SO2829 0.27 -0.6
2,947,671 - SO2829 0.39 +0.4
2,948,000 + +1.5
2,948,008 - +1.4
2,948,094 - +2.5
2,948,266 - SO2830 0.27 +0.8
2,948,365 + SO2830 0.37 -1.1
2,948,375 + SO2830 0.38 -0.8
2,948,375 + SO2830 0.38 +1.9

Or see this region's nucleotide sequence