Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_2824 and SO2827 are separated by 420 nucleotides SO2827 and SO2828 are separated by 2 nucleotides SO2828 and SO2829 are separated by 22 nucleotides SO2829 and SO2830 are separated by 68 nucleotides
SO_2824: SO_2824 - no description, at 2,946,237 to 2,946,491
_2824
SO2827: SO2827 - conserved hypothetical protein (NCBI ptt file), at 2,946,912 to 2,947,283
SO2827
SO2828: SO2828 - hypothetical protein (NCBI ptt file), at 2,947,286 to 2,947,474
SO2828
SO2829: SO2829 - conserved domain protein (NCBI ptt file), at 2,947,497 to 2,947,946
SO2829
SO2830: SO2830 - hypothetical protein (NCBI ptt file), at 2,948,015 to 2,948,953
SO2830
Position (kb)
2947
2948 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2946.294 kb on - strand, within SO_2824 at 2946.363 kb on + strand, within SO_2824 at 2946.513 kb on - strand at 2946.850 kb on + strand at 2946.858 kb on - strand at 2946.858 kb on - strand at 2946.928 kb on + strand at 2946.988 kb on + strand, within SO2827 at 2947.236 kb on + strand, within SO2827 at 2947.258 kb on - strand at 2947.334 kb on - strand, within SO2828 at 2947.482 kb on + strand at 2947.502 kb on - strand at 2947.618 kb on - strand, within SO2829 at 2947.671 kb on - strand, within SO2829 at 2948.000 kb on + strand at 2948.008 kb on - strand at 2948.094 kb on - strand at 2948.266 kb on - strand, within SO2830 at 2948.365 kb on + strand, within SO2830 at 2948.375 kb on + strand, within SO2830 at 2948.375 kb on + strand, within SO2830
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 2,946,294 - SO_2824 0.22 +0.1 2,946,363 + SO_2824 0.49 -1.9 2,946,513 - -1.0 2,946,850 + +1.4 2,946,858 - +2.3 2,946,858 - -1.2 2,946,928 + -0.6 2,946,988 + SO2827 0.20 +0.0 2,947,236 + SO2827 0.87 +2.2 2,947,258 - -0.6 2,947,334 - SO2828 0.25 -1.1 2,947,482 + +0.6 2,947,502 - -1.6 2,947,618 - SO2829 0.27 -0.6 2,947,671 - SO2829 0.39 +0.4 2,948,000 + +1.5 2,948,008 - +1.4 2,948,094 - +2.5 2,948,266 - SO2830 0.27 +0.8 2,948,365 + SO2830 0.37 -1.1 2,948,375 + SO2830 0.38 -0.8 2,948,375 + SO2830 0.38 +1.9
Or see this region's nucleotide sequence