Strain Fitness in Shewanella oneidensis MR-1 around SO2797

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2796 and SO2797 are separated by 197 nucleotidesSO2797 and SO2798 are separated by 29 nucleotidesSO2798 and SO2799 are separated by 160 nucleotides SO2796: SO2796 - conserved hypothetical protein (NCBI ptt file), at 2,917,161 to 2,920,370 SO2796 SO2797: SO2797 - conserved hypothetical protein (NCBI ptt file), at 2,920,568 to 2,920,924 SO2797 SO2798: SO2798 - conserved hypothetical protein (NCBI ptt file), at 2,920,954 to 2,921,646 SO2798 SO2799: SO2799 - lipoprotein, putative (NCBI ptt file), at 2,921,807 to 2,922,271 SO2799 Position (kb) 2920 2921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2919.660 kb on + strand, within SO2796at 2919.684 kb on - strand, within SO2796at 2919.774 kb on + strand, within SO2796at 2919.774 kb on + strand, within SO2796at 2919.777 kb on - strand, within SO2796at 2919.825 kb on - strand, within SO2796at 2919.869 kb on + strand, within SO2796at 2919.869 kb on + strand, within SO2796at 2919.874 kb on + strand, within SO2796at 2920.035 kb on + strand, within SO2796at 2920.127 kb on - strandat 2920.138 kb on + strandat 2920.181 kb on - strandat 2920.240 kb on + strandat 2920.480 kb on + strandat 2920.482 kb on + strandat 2920.496 kb on + strandat 2920.710 kb on - strand, within SO2797at 2920.747 kb on - strand, within SO2797at 2920.996 kb on + strandat 2921.028 kb on + strand, within SO2798at 2921.357 kb on - strand, within SO2798at 2921.483 kb on - strand, within SO2798at 2921.509 kb on - strand, within SO2798at 2921.509 kb on - strand, within SO2798at 2921.509 kb on - strand, within SO2798at 2921.582 kb on - strandat 2921.627 kb on + strandat 2921.652 kb on + strandat 2921.834 kb on + strandat 2921.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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2,919,660 + SO2796 0.78 +0.8
2,919,684 - SO2796 0.79 -1.4
2,919,774 + SO2796 0.81 +0.4
2,919,774 + SO2796 0.81 -0.5
2,919,777 - SO2796 0.81 +0.8
2,919,825 - SO2796 0.83 +3.4
2,919,869 + SO2796 0.84 +2.3
2,919,869 + SO2796 0.84 +1.5
2,919,874 + SO2796 0.85 -0.5
2,920,035 + SO2796 0.90 +1.4
2,920,127 - -0.7
2,920,138 + -0.6
2,920,181 - +2.0
2,920,240 + -1.6
2,920,480 + -1.2
2,920,482 + +1.5
2,920,496 + -0.3
2,920,710 - SO2797 0.40 -3.0
2,920,747 - SO2797 0.50 -2.2
2,920,996 + +0.9
2,921,028 + SO2798 0.11 -0.1
2,921,357 - SO2798 0.58 +1.1
2,921,483 - SO2798 0.76 -0.4
2,921,509 - SO2798 0.80 +1.5
2,921,509 - SO2798 0.80 -0.5
2,921,509 - SO2798 0.80 -1.1
2,921,582 - -0.3
2,921,627 + +0.6
2,921,652 + +3.2
2,921,834 + +0.2
2,921,842 - -0.8

Or see this region's nucleotide sequence