Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2102 and SO2103 are separated by 266 nucleotides SO2103 and SO2104 are separated by 9 nucleotides SO2104 and SO2105 are separated by 79 nucleotides
SO2102: SO2102 - hypothetical protein (NCBI ptt file), at 2,199,122 to 2,200,465
SO2102
SO2103: SO2103 - apbE family protein (NCBI ptt file), at 2,200,732 to 2,201,559
SO2103
SO2104: SO2104 - DNA-binding response regulator YgiX, putative (NCBI ptt file), at 2,201,569 to 2,202,228
SO2104
SO2105: SO2105 - sensor protein YgiY, putative (NCBI ptt file), at 2,202,308 to 2,203,738
SO2105
Position (kb)
2200
2201
2202 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2199.888 kb on - strand, within SO2102 at 2199.947 kb on + strand, within SO2102 at 2199.947 kb on + strand, within SO2102 at 2199.947 kb on + strand, within SO2102 at 2199.955 kb on - strand, within SO2102 at 2199.955 kb on - strand, within SO2102 at 2200.092 kb on - strand, within SO2102 at 2200.112 kb on + strand, within SO2102 at 2200.168 kb on + strand, within SO2102 at 2200.283 kb on + strand, within SO2102 at 2200.284 kb on + strand, within SO2102 at 2200.292 kb on - strand, within SO2102 at 2200.292 kb on - strand, within SO2102 at 2200.292 kb on - strand, within SO2102 at 2200.530 kb on - strand at 2200.569 kb on + strand at 2200.613 kb on + strand at 2200.794 kb on + strand at 2200.884 kb on + strand, within SO2103 at 2201.034 kb on + strand, within SO2103 at 2201.042 kb on - strand, within SO2103 at 2201.168 kb on + strand, within SO2103 at 2201.178 kb on + strand, within SO2103 at 2201.179 kb on + strand, within SO2103 at 2201.229 kb on + strand, within SO2103 at 2201.421 kb on - strand, within SO2103 at 2201.582 kb on - strand at 2201.626 kb on - strand at 2201.762 kb on - strand, within SO2104 at 2201.762 kb on - strand, within SO2104 at 2201.762 kb on - strand, within SO2104 at 2201.873 kb on + strand, within SO2104 at 2201.881 kb on - strand, within SO2104 at 2201.881 kb on - strand, within SO2104 at 2201.974 kb on - strand, within SO2104 at 2201.987 kb on - strand, within SO2104 at 2202.070 kb on + strand, within SO2104 at 2202.070 kb on + strand, within SO2104 at 2202.078 kb on - strand, within SO2104 at 2202.078 kb on - strand, within SO2104 at 2202.115 kb on + strand, within SO2104 at 2202.117 kb on + strand, within SO2104 at 2202.197 kb on + strand at 2202.317 kb on - strand at 2202.375 kb on - strand at 2202.456 kb on - strand, within SO2105 at 2202.463 kb on + strand, within SO2105 at 2202.531 kb on - strand, within SO2105 at 2202.533 kb on + strand, within SO2105
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 2,199,888 - SO2102 0.57 -1.4 2,199,947 + SO2102 0.61 +1.0 2,199,947 + SO2102 0.61 +1.7 2,199,947 + SO2102 0.61 +1.0 2,199,955 - SO2102 0.62 -0.4 2,199,955 - SO2102 0.62 +0.1 2,200,092 - SO2102 0.72 -2.5 2,200,112 + SO2102 0.74 +1.6 2,200,168 + SO2102 0.78 +1.0 2,200,283 + SO2102 0.86 +0.6 2,200,284 + SO2102 0.86 -1.7 2,200,292 - SO2102 0.87 +0.1 2,200,292 - SO2102 0.87 +2.0 2,200,292 - SO2102 0.87 +0.6 2,200,530 - +0.2 2,200,569 + +3.3 2,200,613 + -0.9 2,200,794 + -0.0 2,200,884 + SO2103 0.18 -1.0 2,201,034 + SO2103 0.36 -1.5 2,201,042 - SO2103 0.37 -1.7 2,201,168 + SO2103 0.53 -1.6 2,201,178 + SO2103 0.54 -0.5 2,201,179 + SO2103 0.54 -0.6 2,201,229 + SO2103 0.60 -3.3 2,201,421 - SO2103 0.83 -1.4 2,201,582 - +0.3 2,201,626 - -2.6 2,201,762 - SO2104 0.29 -0.5 2,201,762 - SO2104 0.29 +0.4 2,201,762 - SO2104 0.29 +0.2 2,201,873 + SO2104 0.46 -1.4 2,201,881 - SO2104 0.47 -1.3 2,201,881 - SO2104 0.47 -0.8 2,201,974 - SO2104 0.61 +0.3 2,201,987 - SO2104 0.63 +3.2 2,202,070 + SO2104 0.76 +0.2 2,202,070 + SO2104 0.76 +2.9 2,202,078 - SO2104 0.77 -0.0 2,202,078 - SO2104 0.77 +1.1 2,202,115 + SO2104 0.83 +0.2 2,202,117 + SO2104 0.83 +0.2 2,202,197 + +2.4 2,202,317 - -2.0 2,202,375 - +0.3 2,202,456 - SO2105 0.10 -0.0 2,202,463 + SO2105 0.11 +2.0 2,202,531 - SO2105 0.16 +0.4 2,202,533 + SO2105 0.16 +0.1
Or see this region's nucleotide sequence