Strain Fitness in Shewanella oneidensis MR-1 around SO1872

Experiment: Fumarate electron acceptor; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate electron acceptor; ground control
1,964,462	+		SO1871	0.59	+0.1
1,964,470	-		SO1871	0.59	+0.3
1,964,478	+		SO1871	0.60	-1.4
1,964,510	+		SO1871	0.64	-2.8
1,964,510	+		SO1871	0.64	+1.9
1,964,510	+		SO1871	0.64	-1.2
1,964,518	-		SO1871	0.65	+0.2
1,964,518	-		SO1871	0.65	-1.5
1,964,568	+		SO1871	0.70	-0.7
1,964,596	+		SO1871	0.73	+2.8
1,964,596	-		SO1871	0.73	-1.9
1,964,605	+		SO1871	0.74	+2.7
1,964,643	+		SO1871	0.78	+0.4
1,964,726	-		SO1871	0.87	+0.1
1,964,750	+		SO1871	0.89	+3.0
1,964,771	+				-0.8
1,964,771	+				+0.8
1,964,776	+				-2.6
1,964,984	+				-0.2
1,964,992	-				+1.4
1,965,054	-				-0.5
1,965,526	-				+0.8
1,965,619	+				+1.1
1,965,735	+				+0.2
1,965,899	-		SO1872	0.11	-2.5
1,965,986	-		SO1872	0.13	-1.7
1,966,103	-		SO1872	0.16	+1.0
1,966,257	+		SO1872	0.20	-0.3
1,966,398	+		SO1872	0.23	-1.7
1,966,430	+		SO1872	0.24	-0.2
1,966,490	+		SO1872	0.25	-1.1
1,966,498	-		SO1872	0.25	+0.1
1,966,521	+		SO1872	0.26	+0.6
1,966,529	-		SO1872	0.26	+0.1
1,966,552	-		SO1872	0.26	+0.3
1,966,624	-		SO1872	0.28	-1.9
1,966,636	-		SO1872	0.28	+2.5
1,966,670	+		SO1872	0.29	-1.2
1,966,774	+		SO1872	0.32	-1.5
1,966,782	-		SO1872	0.32	+1.2
1,966,808	-		SO1872	0.32	+1.5
1,966,862	-		SO1872	0.34	-0.7
1,966,863	-		SO1872	0.34	-0.9
1,966,887	-		SO1872	0.34	-0.3
1,966,927	+		SO1872	0.35	-1.7
1,967,052	-		SO1872	0.38	-2.4
1,967,120	-		SO1872	0.40	+0.1
1,967,155	-		SO1872	0.41	+2.7
1,967,157	-		SO1872	0.41	+0.5
1,967,165	+		SO1872	0.41	+1.0
1,967,286	+		SO1872	0.44	+3.3
1,967,341	-		SO1872	0.45	+0.8
1,967,510	+		SO1872	0.49	-0.1
1,967,626	-		SO1872	0.52	-1.7
1,967,626	-		SO1872	0.52	+0.8
1,967,797	-		SO1872	0.56	-0.0
1,967,847	+		SO1872	0.57	+1.5
1,967,936	+		SO1872	0.59	-1.7
1,968,149	+		SO1872	0.64	-1.3
1,968,196	-		SO1872	0.65	-3.7
1,968,268	-		SO1872	0.67	+1.0
1,968,315	-		SO1872	0.68	+0.0
1,968,315	-		SO1872	0.68	-0.8
1,968,315	-		SO1872	0.68	-1.5
1,968,436	+		SO1872	0.71	-0.1
1,968,475	-		SO1872	0.71	+2.8
1,968,475	-		SO1872	0.71	-1.9
1,968,500	-		SO1872	0.72	+0.0
1,968,529	-		SO1872	0.73	+0.3
1,968,584	-		SO1872	0.74	+2.5
1,968,602	+		SO1872	0.74	-0.5
1,968,610	-		SO1872	0.75	+0.0
1,968,628	-		SO1872	0.75	+3.0
1,968,638	-		SO1872	0.75	+1.4
1,968,680	+		SO1872	0.76	+0.3
1,968,688	+		SO1872	0.76	-0.9
1,968,688	-		SO1872	0.76	+1.9
1,968,696	-		SO1872	0.77	-0.6
1,968,707	+		SO1872	0.77	+0.7
1,968,714	-		SO1872	0.77	-1.5
1,968,752	+		SO1872	0.78	+2.6
1,968,786	+		SO1872	0.79	+0.7
1,968,809	+		SO1872	0.79	-2.6
1,968,817	-		SO1872	0.80	-2.1
1,968,840	-		SO1872	0.80	-0.6
1,968,854	+		SO1872	0.80	-0.0
1,968,883	-		SO1872	0.81	+0.7
1,968,921	-		SO1872	0.82	+0.2
1,969,051	+		SO1872	0.85	+3.3
1,969,054	-		SO1872	0.85	+4.1
1,969,089	+		SO1872	0.86	+2.9
1,969,139	+		SO1872	0.87	+1.6
1,969,288	+				-0.5
1,969,296	+				+0.6
1,969,313	-				-0.5
1,969,385	-				+3.4
1,969,436	+				+0.6
1,969,442	-				-0.2
1,969,461	+				+1.4
1,969,475	+				-3.2
1,969,475	+				-1.0
1,969,475	+				+0.9
1,969,475	+				+0.5
1,969,483	-				+1.4
1,969,483	-				+1.6
1,969,483	-				+0.4
1,969,483	-				+0.4
1,969,483	-				+1.4
1,969,483	-				-1.2
1,969,483	-				-0.9
1,969,498	+				-1.2
1,969,529	+				-3.2
1,969,531	+				+1.5
1,969,534	-				+1.8
1,969,538	-				+1.5
1,969,538	-				+1.4
1,969,538	-				+1.0
1,969,538	-				-0.5
1,969,540	+				-1.5
1,969,550	+				-0.5
1,969,554	+				-2.4
1,969,555	+				+0.5
1,969,562	+				+0.1
1,969,562	-				+1.1
1,969,570	-				+2.7
1,969,581	+				-3.4
1,969,589	+				-0.9
1,969,589	-				+1.2
1,969,589	-				+0.6
1,969,627	-				-0.5
1,969,635	+				-1.4
1,969,642	-				-1.6
1,969,667	+				+0.1
1,969,675	-				+0.5
1,969,756	-				+1.1
1,969,761	-				-1.9
1,969,801	+				+0.6
1,969,851	-				+1.5
1,969,895	-				+1.9
1,969,950	+				-0.5
1,969,950	+				-0.9
1,969,950	+				+0.7
1,969,958	+				-1.7
1,969,958	-				-0.1
1,969,964	+				+1.2
1,969,966	-				+2.1
1,969,968	+				-1.7
1,969,976	-				+0.6
1,969,976	-				+0.4
1,969,976	-				-2.6
1,969,997	+				+0.3
1,969,999	-				+1.4
1,970,000	-				+0.8
1,970,016	+				-2.2
1,970,020	-				+0.4
1,970,023	+				-0.5
1,970,025	-				-1.7
1,970,031	-				+1.9
1,970,031	-				+0.9
1,970,035	+				-1.5
1,970,063	+				+1.0
1,970,091	-				-2.4
1,970,092	-				-1.7
1,970,093	+				+1.2
1,970,103	+				-1.2
1,970,111	-				-0.5
1,970,132	-				-0.5
1,970,161	-				-0.5
1,970,206	+				+0.4
1,970,220	-				-0.5
1,970,250	+				-2.6
1,970,250	+				-0.3
1,970,250	+				+0.6
1,970,258	-				+1.1
1,970,258	-				+1.5
1,970,258	-				+0.7
1,970,258	-				-0.7
1,970,258	-				-2.4
1,970,258	-				-1.1
1,970,258	-				-0.4
1,970,258	-				-0.1
1,970,266	-				-0.1
1,970,266	-				-0.3
1,970,272	+				+1.8
1,970,272	+				-1.1
1,970,272	+				+1.9
1,970,272	+				-0.3
1,970,288	-				-0.5
1,970,366	-				-2.2
1,970,379	-				-3.0
1,970,379	-				-2.6
1,970,386	+		SO1873	0.11	+0.3
1,970,388	+		SO1873	0.11	+1.3
1,970,388	+		SO1873	0.11	+0.5
1,970,388	+		SO1873	0.11	-1.9
1,970,395	+		SO1873	0.12	+1.1
1,970,396	-		SO1873	0.13	-2.6
1,970,396	-		SO1873	0.13	+0.8
1,970,403	-		SO1873	0.14	-1.3
1,970,406	+		SO1873	0.14	-0.8
1,970,406	+		SO1873	0.14	+0.9
1,970,406	+		SO1873	0.14	+1.1
1,970,406	+		SO1873	0.14	+2.2
1,970,406	+		SO1873	0.14	-3.1
1,970,414	-		SO1873	0.16	+0.7
1,970,414	-		SO1873	0.16	-1.9
1,970,414	-		SO1873	0.16	-0.4
1,970,414	-		SO1873	0.16	-0.2
1,970,414	-		SO1873	0.16	+1.5
1,970,421	-		SO1873	0.17	-0.5
1,970,462	-		SO1873	0.23	-1.6
1,970,464	+		SO1873	0.24	+1.6
1,970,464	+		SO1873	0.24	-2.9
1,970,472	-		SO1873	0.25	-2.1
1,970,481	+		SO1873	0.27	-1.2
1,970,481	+		SO1873	0.27	-0.3
1,970,565	+		SO1873	0.40	+1.4
1,970,572	-		SO1873	0.42	+0.4
1,970,602	+		SO1873	0.47	+1.5
1,970,610	-		SO1873	0.48	-1.1
1,970,626	+		SO1873	0.50	-0.1
1,970,634	-		SO1873	0.52	-1.9
1,970,650	+		SO1873	0.54	-3.5
1,970,653	-		SO1873	0.55	+1.0
1,970,653	-		SO1873	0.55	-0.0
1,970,654	-		SO1873	0.55	-2.2
1,970,676	-		SO1873	0.59	+1.2
1,970,691	-		SO1873	0.61	+0.7