Strain Fitness in Shewanella oneidensis MR-1 around SO0637

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrcB and ppiC-1 are separated by 77 nucleotidesppiC-1 and SO0636 are separated by 97 nucleotidesSO0636 and SO0637 overlap by 4 nucleotidesSO0637 and SO0638 are separated by 27 nucleotidesSO0638 and SO0639 are separated by 188 nucleotides SO0633: mrcB - penicillin-binding protein 1B (NCBI ptt file), at 660,661 to 662,967 mrcB SO0635: ppiC-1 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 663,045 to 663,323 ppiC-1 SO0636: SO0636 - acetyltransferase, GNAT family (NCBI ptt file), at 663,421 to 663,915 SO0636 SO0637: SO0637 - conserved hypothetical protein (NCBI ptt file), at 663,912 to 664,187 SO0637 SO0638: SO0638 - hypothetical protein (NCBI ptt file), at 664,215 to 664,415 SO0638 SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717 SO0639 Position (kb) 663 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 663.090 kb on - strand, within ppiC-1at 663.200 kb on + strand, within ppiC-1at 663.432 kb on - strandat 663.475 kb on + strand, within SO0636at 663.485 kb on - strand, within SO0636at 663.519 kb on - strand, within SO0636at 663.588 kb on + strand, within SO0636at 663.732 kb on + strand, within SO0636at 663.930 kb on + strandat 664.114 kb on + strand, within SO0637at 664.265 kb on + strand, within SO0638at 664.293 kb on + strand, within SO0638at 664.352 kb on + strand, within SO0638at 664.393 kb on - strand, within SO0638at 664.506 kb on + strandat 664.506 kb on + strandat 664.506 kb on + strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.624 kb on + strandat 664.630 kb on + strandat 664.633 kb on - strandat 664.645 kb on - strandat 664.705 kb on + strandat 664.768 kb on - strandat 664.779 kb on - strandat 664.794 kb on - strandat 664.876 kb on + strandat 664.878 kb on + strandat 664.897 kb on + strandat 664.897 kb on + strandat 664.904 kb on + strandat 664.978 kb on + strand, within SO0639at 664.987 kb on - strand, within SO0639at 665.025 kb on - strand, within SO0639at 665.082 kb on - strand, within SO0639at 665.095 kb on - strand, within SO0639at 665.106 kb on - strand, within SO0639at 665.107 kb on - strand, within SO0639

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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663,090 - ppiC-1 SO0635 0.16 +1.3
663,200 + ppiC-1 SO0635 0.56 +0.6
663,432 - -2.6
663,475 + SO0636 0.11 -1.0
663,485 - SO0636 0.13 +1.2
663,519 - SO0636 0.20 +1.2
663,588 + SO0636 0.34 +0.3
663,732 + SO0636 0.63 +1.5
663,930 + +0.8
664,114 + SO0637 0.73 -1.5
664,265 + SO0638 0.25 -3.2
664,293 + SO0638 0.39 +5.7
664,352 + SO0638 0.68 -0.0
664,393 - SO0638 0.89 +0.7
664,506 + +2.2
664,506 + -0.0
664,506 + -1.3
664,514 - +0.5
664,514 - -0.4
664,514 - +6.4
664,514 - +0.1
664,514 - -0.5
664,514 - -1.1
664,514 - -0.5
664,514 - +1.0
664,514 - -0.5
664,624 + -0.7
664,630 + -1.0
664,633 - -0.5
664,645 - -0.5
664,705 + -1.3
664,768 - -0.2
664,779 - +0.3
664,794 - -0.0
664,876 + -0.1
664,878 + -2.5
664,897 + +0.5
664,897 + -0.6
664,904 + -1.5
664,978 + SO0639 0.12 +0.5
664,987 - SO0639 0.12 +1.0
665,025 - SO0639 0.14 -1.9
665,082 - SO0639 0.15 +1.7
665,095 - SO0639 0.16 +0.7
665,106 - SO0639 0.16 +0.5
665,107 - SO0639 0.16 +0.9

Or see this region's nucleotide sequence