Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0615 and SO0616 are separated by 55 nucleotides SO0616 and argD are separated by 308 nucleotides
SO0615: SO0615 - hypothetical protein (NCBI ptt file), at 641,032 to 642,177
SO0615
SO0616: SO0616 - esterase, putative (NCBI ptt file), at 642,233 to 643,144
SO0616
SO0617: argD - acetylornithine aminotransferase (NCBI ptt file), at 643,453 to 644,670
argD
Position (kb) 642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 641.268 kb on + strand, within SO0615 at 641.280 kb on + strand, within SO0615 at 641.401 kb on - strand, within SO0615 at 641.408 kb on - strand, within SO0615 at 641.415 kb on - strand, within SO0615 at 641.462 kb on - strand, within SO0615 at 641.491 kb on - strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.492 kb on + strand, within SO0615 at 641.613 kb on + strand, within SO0615 at 641.613 kb on + strand, within SO0615 at 641.621 kb on - strand, within SO0615 at 641.621 kb on - strand, within SO0615 at 641.703 kb on - strand, within SO0615 at 641.706 kb on + strand, within SO0615 at 641.749 kb on - strand, within SO0615 at 641.764 kb on - strand, within SO0615 at 641.830 kb on + strand, within SO0615 at 642.035 kb on - strand, within SO0615 at 642.043 kb on + strand, within SO0615 at 642.062 kb on - strand, within SO0615 at 642.138 kb on - strand at 642.198 kb on + strand at 642.298 kb on - strand at 642.751 kb on + strand, within SO0616 at 642.847 kb on - strand, within SO0616 at 642.864 kb on + strand, within SO0616 at 642.864 kb on + strand at 642.935 kb on + strand, within SO0616 at 642.981 kb on + strand, within SO0616 at 643.390 kb on + strand at 643.470 kb on - strand at 643.627 kb on + strand, within argD at 643.787 kb on + strand, within argD at 643.875 kb on - strand, within argD at 643.949 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 641,268 + SO0615 0.21 +1.4 641,280 + SO0615 0.22 +0.7 641,401 - SO0615 0.32 +1.7 641,408 - SO0615 0.33 -3.7 641,415 - SO0615 0.33 -0.8 641,462 - SO0615 0.38 -1.3 641,491 - SO0615 0.40 -2.5 641,492 + SO0615 0.40 -1.0 641,492 + SO0615 0.40 +0.4 641,492 + SO0615 0.40 +0.3 641,613 + SO0615 0.51 -1.6 641,613 + SO0615 0.51 +2.2 641,621 - SO0615 0.51 -0.2 641,621 - SO0615 0.51 -2.4 641,703 - SO0615 0.59 -0.1 641,706 + SO0615 0.59 -0.4 641,749 - SO0615 0.63 +0.5 641,764 - SO0615 0.64 -0.4 641,830 + SO0615 0.70 -1.0 642,035 - SO0615 0.88 -0.0 642,043 + SO0615 0.88 +2.2 642,062 - SO0615 0.90 -0.5 642,138 - +5.8 642,198 + -0.5 642,298 - -1.8 642,751 + SO0616 0.57 -3.0 642,847 - SO0616 0.67 -1.8 642,864 + SO0616 0.69 -1.4 642,864 + +0.5 642,935 + SO0616 0.77 +0.1 642,981 + SO0616 0.82 -1.3 643,390 + -0.1 643,470 - -2.5 643,627 + argD SO0617 0.14 -1.3 643,787 + argD SO0617 0.27 -3.0 643,875 - argD SO0617 0.35 -1.5 643,949 + argD SO0617 0.41 -2.9 644,073 + argD SO0617 0.51 -1.3 644,073 + argD SO0617 0.51 +0.0 644,073 + argD SO0617 0.51 -0.2 644,073 + argD SO0617 0.51 +0.0 644,073 + argD SO0617 0.51 +1.2 644,081 - argD SO0617 0.52 -2.0 644,081 - argD SO0617 0.52 +0.6 644,081 - argD SO0617 0.52 +1.5 644,081 - argD SO0617 0.52 +1.3 644,081 - argD SO0617 0.52 +0.7 644,081 - argD SO0617 0.52 -0.8 644,081 - argD SO0617 0.52 -0.0 644,081 - argD SO0617 0.52 +0.6
Or see this region's nucleotide sequence