Strain Fitness in Shewanella oneidensis MR-1 around SO0556

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0555 and SO0556 are separated by 139 nucleotidesSO0556 and SO0557 are separated by 48 nucleotides SO0555: SO0555 - conserved hypothetical protein (NCBI ptt file), at 574,760 to 576,514 SO0555 SO0556: SO0556 - hypothetical protein (NCBI ptt file), at 576,654 to 576,962 SO0556 SO0557: SO0557 - conserved hypothetical protein (NCBI ptt file), at 577,011 to 577,907 SO0557 Position (kb) 576 577Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 575.665 kb on + strand, within SO0555at 575.671 kb on + strand, within SO0555at 575.681 kb on + strand, within SO0555at 575.702 kb on + strand, within SO0555at 575.703 kb on + strand, within SO0555at 575.791 kb on - strand, within SO0555at 575.842 kb on + strand, within SO0555at 575.904 kb on + strand, within SO0555at 576.007 kb on + strand, within SO0555at 576.007 kb on + strand, within SO0555at 576.007 kb on + strand, within SO0555at 576.008 kb on - strand, within SO0555at 576.039 kb on + strand, within SO0555at 576.047 kb on - strand, within SO0555at 576.047 kb on - strand, within SO0555at 576.060 kb on + strand, within SO0555at 576.062 kb on + strand, within SO0555at 576.070 kb on - strand, within SO0555at 576.091 kb on + strand, within SO0555at 576.096 kb on + strand, within SO0555at 576.099 kb on - strand, within SO0555at 576.192 kb on - strand, within SO0555at 576.208 kb on + strand, within SO0555at 576.268 kb on - strand, within SO0555at 576.279 kb on - strand, within SO0555at 576.385 kb on + strandat 576.385 kb on + strandat 576.400 kb on + strandat 576.408 kb on - strandat 576.408 kb on - strandat 576.408 kb on - strandat 576.408 kb on - strandat 576.499 kb on + strandat 576.507 kb on - strandat 576.545 kb on + strandat 576.545 kb on + strandat 576.545 kb on + strandat 576.553 kb on - strandat 576.553 kb on - strandat 576.553 kb on - strandat 576.680 kb on - strandat 576.682 kb on + strandat 576.682 kb on + strandat 576.722 kb on - strand, within SO0556at 576.736 kb on + strand, within SO0556at 576.804 kb on + strand, within SO0556at 576.967 kb on - strandat 577.007 kb on + strandat 577.008 kb on - strandat 577.046 kb on + strandat 577.061 kb on + strandat 577.076 kb on + strandat 577.158 kb on - strand, within SO0557at 577.158 kb on - strand, within SO0557at 577.214 kb on - strand, within SO0557at 577.389 kb on + strand, within SO0557at 577.389 kb on + strand, within SO0557at 577.389 kb on + strand, within SO0557at 577.389 kb on + strand, within SO0557at 577.572 kb on - strand, within SO0557at 577.576 kb on + strand, within SO0557at 577.576 kb on + strand, within SO0557at 577.584 kb on - strand, within SO0557at 577.584 kb on - strand, within SO0557at 577.622 kb on - strand, within SO0557at 577.667 kb on - strand, within SO0557at 577.667 kb on - strand, within SO0557at 577.713 kb on - strand, within SO0557at 577.793 kb on + strand, within SO0557at 577.813 kb on + strand, within SO0557at 577.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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575,665 + SO0555 0.52 +0.1
575,671 + SO0555 0.52 +0.6
575,681 + SO0555 0.52 +1.7
575,702 + SO0555 0.54 +0.8
575,703 + SO0555 0.54 +1.4
575,791 - SO0555 0.59 -2.2
575,842 + SO0555 0.62 +1.2
575,904 + SO0555 0.65 +0.8
576,007 + SO0555 0.71 -0.9
576,007 + SO0555 0.71 -1.0
576,007 + SO0555 0.71 -0.2
576,008 - SO0555 0.71 -1.2
576,039 + SO0555 0.73 -2.0
576,047 - SO0555 0.73 -0.2
576,047 - SO0555 0.73 -0.2
576,060 + SO0555 0.74 +0.1
576,062 + SO0555 0.74 +0.2
576,070 - SO0555 0.75 +1.4
576,091 + SO0555 0.76 +0.4
576,096 + SO0555 0.76 +0.9
576,099 - SO0555 0.76 +1.7
576,192 - SO0555 0.82 -1.1
576,208 + SO0555 0.83 -3.5
576,268 - SO0555 0.86 -0.2
576,279 - SO0555 0.87 +1.9
576,385 + +3.0
576,385 + -2.0
576,400 + +0.3
576,408 - +1.5
576,408 - -2.7
576,408 - +0.8
576,408 - -1.0
576,499 + +1.6
576,507 - +0.3
576,545 + +1.6
576,545 + -1.6
576,545 + -1.9
576,553 - +0.0
576,553 - +1.7
576,553 - -0.8
576,680 - -3.4
576,682 + +1.0
576,682 + -0.4
576,722 - SO0556 0.22 -0.7
576,736 + SO0556 0.27 -2.2
576,804 + SO0556 0.49 -0.7
576,967 - +1.1
577,007 + -3.0
577,008 - +0.6
577,046 + -0.7
577,061 + +0.0
577,076 + +0.1
577,158 - SO0557 0.16 +2.1
577,158 - SO0557 0.16 -0.4
577,214 - SO0557 0.23 +0.1
577,389 + SO0557 0.42 -0.3
577,389 + SO0557 0.42 +0.6
577,389 + SO0557 0.42 +0.7
577,389 + SO0557 0.42 -3.5
577,572 - SO0557 0.63 +0.1
577,576 + SO0557 0.63 +0.0
577,576 + SO0557 0.63 -1.5
577,584 - SO0557 0.64 +0.6
577,584 - SO0557 0.64 +1.0
577,622 - SO0557 0.68 +1.0
577,667 - SO0557 0.73 +1.5
577,667 - SO0557 0.73 -2.0
577,713 - SO0557 0.78 +1.0
577,793 + SO0557 0.87 -0.6
577,813 + SO0557 0.89 +0.2
577,935 - -1.0

Or see this region's nucleotide sequence