Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0373 and SO0374 overlap by 28 nucleotides SO0374 and SO0375 are separated by 59 nucleotides SO0375 and SO_0376 are separated by 232 nucleotides
SO_0373: SO_0373 - no description, at 386,192 to 387,124
_0373
SO0374: SO0374 - ISSod1, transposase OrfB (NCBI ptt file), at 387,097 to 387,906
SO0374
SO0375: SO0375 - ISSod1, transposase OrfA (NCBI ptt file), at 387,966 to 388,256
SO0375
SO_0376: SO_0376 - no description, at 388,489 to 388,770
_0376
Position (kb) 387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.267 kb on - strand at 386.269 kb on - strand at 386.334 kb on - strand, within SO_0373 at 386.358 kb on - strand, within SO_0373 at 386.359 kb on - strand, within SO_0373 at 386.387 kb on + strand, within SO_0373 at 386.394 kb on + strand, within SO_0373 at 386.394 kb on + strand, within SO_0373 at 386.396 kb on - strand, within SO_0373 at 386.402 kb on - strand, within SO_0373 at 386.404 kb on - strand, within SO_0373 at 386.540 kb on + strand, within SO_0373 at 386.548 kb on - strand, within SO_0373 at 386.595 kb on - strand, within SO_0373 at 386.622 kb on - strand, within SO_0373 at 386.692 kb on + strand, within SO_0373 at 386.700 kb on - strand, within SO_0373 at 386.723 kb on + strand, within SO_0373 at 386.731 kb on - strand, within SO_0373 at 386.747 kb on - strand, within SO_0373 at 386.767 kb on + strand, within SO_0373 at 386.767 kb on + strand, within SO_0373 at 386.767 kb on + strand, within SO_0373 at 386.767 kb on + strand, within SO_0373 at 386.782 kb on + strand, within SO_0373 at 386.790 kb on - strand, within SO_0373 at 386.825 kb on + strand, within SO_0373 at 386.843 kb on - strand, within SO_0373 at 386.854 kb on - strand, within SO_0373 at 386.867 kb on - strand, within SO_0373 at 386.889 kb on + strand, within SO_0373 at 386.915 kb on - strand, within SO_0373 at 387.093 kb on - strand at 387.093 kb on - strand at 387.103 kb on - strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.309 kb on + strand at 388.314 kb on + strand at 388.327 kb on + strand at 388.341 kb on - strand at 388.349 kb on - strand at 388.351 kb on + strand at 388.351 kb on + strand at 388.359 kb on - strand at 388.359 kb on - strand at 388.466 kb on - strand at 388.468 kb on + strand at 388.468 kb on + strand at 388.476 kb on - strand at 388.476 kb on - strand at 388.476 kb on - strand at 388.527 kb on + strand, within SO_0376 at 388.527 kb on + strand, within SO_0376 at 388.527 kb on + strand, within SO_0376 at 388.535 kb on - strand, within SO_0376 at 388.535 kb on - strand, within SO_0376 at 388.537 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.600 kb on + strand, within SO_0376 at 388.607 kb on + strand, within SO_0376 at 388.607 kb on - strand, within SO_0376 at 388.625 kb on + strand, within SO_0376 at 388.668 kb on + strand, within SO_0376 at 388.690 kb on + strand, within SO_0376 at 388.870 kb on + strand at 388.877 kb on + strand at 388.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 386,267 - -1.2 386,269 - -2.7 386,334 - SO_0373 0.15 -2.1 386,358 - SO_0373 0.18 -0.9 386,359 - SO_0373 0.18 +0.3 386,387 + SO_0373 0.21 +1.5 386,394 + SO_0373 0.22 +1.1 386,394 + SO_0373 0.22 -2.6 386,396 - SO_0373 0.22 -1.4 386,402 - SO_0373 0.23 -0.4 386,404 - SO_0373 0.23 -3.1 386,540 + SO_0373 0.37 -2.4 386,548 - SO_0373 0.38 +0.9 386,595 - SO_0373 0.43 +1.2 386,622 - SO_0373 0.46 -2.2 386,692 + SO_0373 0.54 -0.7 386,700 - SO_0373 0.54 -1.8 386,723 + SO_0373 0.57 +0.2 386,731 - SO_0373 0.58 +0.6 386,747 - SO_0373 0.59 -2.1 386,767 + SO_0373 0.62 +0.6 386,767 + SO_0373 0.62 -0.0 386,767 + SO_0373 0.62 +1.5 386,767 + SO_0373 0.62 -2.2 386,782 + SO_0373 0.63 +0.6 386,790 - SO_0373 0.64 -1.0 386,825 + SO_0373 0.68 +1.8 386,843 - SO_0373 0.70 +0.0 386,854 - SO_0373 0.71 -3.3 386,867 - SO_0373 0.72 +2.6 386,889 + SO_0373 0.75 +0.9 386,915 - SO_0373 0.77 -0.4 387,093 - +0.3 387,093 - +2.4 387,103 - -0.7 388,309 + +0.8 388,309 + -2.1 388,309 + +0.6 388,309 + +0.1 388,309 + +0.1 388,309 + -0.3 388,309 + +1.1 388,309 + +0.8 388,309 + +2.2 388,314 + +1.6 388,327 + +0.1 388,341 - +1.6 388,349 - -0.1 388,351 + +0.3 388,351 + +0.2 388,359 - -0.8 388,359 - -0.9 388,466 - +2.1 388,468 + -1.4 388,468 + +0.5 388,476 - +0.3 388,476 - -0.4 388,476 - +1.6 388,527 + SO_0376 0.13 +0.3 388,527 + SO_0376 0.13 -1.5 388,527 + SO_0376 0.13 +0.0 388,535 - SO_0376 0.16 -2.5 388,535 - SO_0376 0.16 -0.9 388,537 + SO_0376 0.17 -0.2 388,600 + SO_0376 0.39 +0.5 388,600 + SO_0376 0.39 -1.9 388,607 + SO_0376 0.42 -0.2 388,607 - SO_0376 0.42 +0.4 388,625 + SO_0376 0.48 +0.9 388,668 + SO_0376 0.63 +0.4 388,690 + SO_0376 0.71 -1.9 388,870 + +0.9 388,877 + +0.3 388,895 - +1.6
Or see this region's nucleotide sequence