Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sp5SC and tRNA-Asp-1 are separated by 34 nucleotides tRNA-Asp-1 and SO0044 are separated by 440 nucleotides SO0044 and SO0045 are separated by 24 nucleotides SO0045 and SO0046 overlap by 26 nucleotides SO0046 and SO0047 are separated by 9 nucleotides
SO_r003: Sp5SC - 5S ribosomal RNA (RefSeq), at 51,057 to 51,176
Sp5SC
SO_t001: tRNA-Asp-1 - tRNA-Asp (RefSeq), at 51,211 to 51,287
tRNA-Asp-1
SO0044: SO0044 - conserved hypothetical protein (NCBI ptt file), at 51,728 to 51,979
SO0044
SO0045: SO0045 - Rrf2 family protein (NCBI ptt file), at 52,004 to 52,459
SO0045
SO0046: SO0046 - conserved hypothetical protein (NCBI ptt file), at 52,434 to 53,189
SO0046
SO0047: SO0047 - carboxyl-terminal protease, putative (NCBI ptt file), at 53,199 to 54,407
SO0047
Position (kb) 52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.359 kb on + strand at 51.367 kb on - strand at 51.497 kb on - strand at 51.498 kb on - strand at 51.556 kb on + strand at 51.665 kb on - strand at 51.745 kb on - strand at 51.815 kb on + strand, within SO0044 at 51.823 kb on - strand, within SO0044 at 51.823 kb on - strand, within SO0044 at 51.832 kb on + strand, within SO0044 at 51.832 kb on + strand, within SO0044 at 51.840 kb on - strand, within SO0044 at 51.906 kb on + strand, within SO0044 at 52.028 kb on - strand at 52.045 kb on + strand at 52.289 kb on + strand, within SO0045 at 52.351 kb on - strand, within SO0045 at 52.353 kb on + strand, within SO0045 at 52.519 kb on - strand, within SO0046 at 52.589 kb on + strand, within SO0046 at 52.709 kb on + strand, within SO0046 at 52.759 kb on + strand, within SO0046 at 52.830 kb on + strand, within SO0046 at 52.870 kb on - strand, within SO0046 at 52.935 kb on + strand, within SO0046 at 52.935 kb on + strand, within SO0046 at 52.943 kb on - strand, within SO0046 at 52.943 kb on - strand, within SO0046 at 52.966 kb on + strand, within SO0046 at 52.990 kb on + strand, within SO0046 at 52.998 kb on - strand, within SO0046 at 53.005 kb on + strand, within SO0046 at 53.013 kb on - strand, within SO0046 at 53.013 kb on - strand, within SO0046 at 53.022 kb on + strand, within SO0046 at 53.030 kb on - strand, within SO0046 at 53.142 kb on - strand at 53.144 kb on + strand at 53.152 kb on - strand at 53.152 kb on - strand at 53.254 kb on - strand at 53.334 kb on - strand, within SO0047 at 53.346 kb on - strand, within SO0047 at 53.382 kb on + strand, within SO0047 at 53.389 kb on + strand, within SO0047 at 53.390 kb on - strand, within SO0047 at 53.428 kb on + strand, within SO0047 at 53.441 kb on + strand, within SO0047
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 51,359 + +2.7 51,367 - +0.0 51,497 - -2.0 51,498 - +0.2 51,556 + -1.4 51,665 - +2.1 51,745 - -2.7 51,815 + SO0044 0.35 -1.9 51,823 - SO0044 0.38 +1.7 51,823 - SO0044 0.38 +0.6 51,832 + SO0044 0.41 -1.4 51,832 + SO0044 0.41 +0.4 51,840 - SO0044 0.44 +1.1 51,906 + SO0044 0.71 -1.0 52,028 - -2.9 52,045 + -1.4 52,289 + SO0045 0.62 -1.7 52,351 - SO0045 0.76 -1.8 52,353 + SO0045 0.77 -0.9 52,519 - SO0046 0.11 +0.0 52,589 + SO0046 0.21 +1.0 52,709 + SO0046 0.36 +0.6 52,759 + SO0046 0.43 +1.7 52,830 + SO0046 0.52 +1.0 52,870 - SO0046 0.58 +0.1 52,935 + SO0046 0.66 +0.9 52,935 + SO0046 0.66 +0.4 52,943 - SO0046 0.67 -0.7 52,943 - SO0046 0.67 -2.3 52,966 + SO0046 0.70 -3.3 52,990 + SO0046 0.74 -0.1 52,998 - SO0046 0.75 +2.7 53,005 + SO0046 0.76 +1.9 53,013 - SO0046 0.77 +1.2 53,013 - SO0046 0.77 -1.2 53,022 + SO0046 0.78 -2.6 53,030 - SO0046 0.79 +0.4 53,142 - -0.6 53,144 + -1.2 53,152 - +0.6 53,152 - -3.0 53,254 - +2.0 53,334 - SO0047 0.11 -2.7 53,346 - SO0047 0.12 -0.8 53,382 + SO0047 0.15 +1.6 53,389 + SO0047 0.16 +1.9 53,390 - SO0047 0.16 +1.2 53,428 + SO0047 0.19 -1.3 53,441 + SO0047 0.20 -2.1
Or see this region's nucleotide sequence