Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0018 and SO0019 are separated by 47 nucleotides SO0019 and fadA are separated by 246 nucleotides fadA and fadB are separated by 22 nucleotides
SO0018: SO0018 - conserved hypothetical protein (NCBI ptt file), at 22,330 to 22,767
SO0018
SO0019: SO0019 - conserved hypothetical protein (NCBI ptt file), at 22,815 to 23,060
SO0019
SO0020: fadA - fatty oxidation complex, beta subunit (NCBI ptt file), at 23,307 to 24,470
fadA
SO0021: fadB - fatty oxidation complex, alpha subunit (NCBI ptt file), at 24,493 to 26,643
fadB
Position (kb) 23
24
25 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 22.313 kb on - strand at 22.385 kb on - strand, within SO0018 at 22.386 kb on + strand, within SO0018 at 22.387 kb on + strand, within SO0018 at 22.394 kb on - strand, within SO0018 at 22.404 kb on + strand, within SO0018 at 22.404 kb on + strand, within SO0018 at 22.404 kb on + strand, within SO0018 at 22.404 kb on + strand, within SO0018 at 22.412 kb on - strand, within SO0018 at 22.412 kb on - strand, within SO0018 at 22.423 kb on + strand, within SO0018 at 22.576 kb on + strand, within SO0018 at 22.576 kb on + strand, within SO0018 at 22.676 kb on + strand, within SO0018 at 22.679 kb on + strand, within SO0018 at 22.679 kb on + strand, within SO0018 at 22.679 kb on + strand, within SO0018 at 22.687 kb on - strand, within SO0018 at 22.687 kb on - strand, within SO0018 at 22.687 kb on - strand, within SO0018 at 22.708 kb on - strand, within SO0018 at 22.710 kb on + strand, within SO0018 at 22.713 kb on - strand, within SO0018 at 22.808 kb on - strand at 23.169 kb on - strand at 23.282 kb on - strand at 23.305 kb on + strand at 23.305 kb on + strand at 23.305 kb on + strand at 23.313 kb on - strand at 23.313 kb on - strand at 23.313 kb on - strand at 23.313 kb on - strand at 23.313 kb on - strand at 23.334 kb on + strand at 23.340 kb on + strand at 23.340 kb on + strand at 23.342 kb on - strand at 23.342 kb on - strand at 23.347 kb on - strand at 23.375 kb on - strand at 23.381 kb on - strand at 23.405 kb on + strand at 23.423 kb on + strand at 23.423 kb on + strand at 23.428 kb on + strand, within fadA at 23.431 kb on - strand, within fadA at 23.431 kb on - strand, within fadA at 23.441 kb on - strand, within fadA at 23.472 kb on - strand, within fadA at 23.499 kb on - strand, within fadA at 23.501 kb on + strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.509 kb on - strand, within fadA at 23.510 kb on - strand, within fadA at 23.520 kb on + strand, within fadA at 23.521 kb on + strand, within fadA at 23.521 kb on + strand, within fadA at 23.529 kb on - strand, within fadA at 23.529 kb on - strand, within fadA at 23.576 kb on - strand, within fadA at 23.592 kb on + strand, within fadA at 23.595 kb on - strand, within fadA at 23.600 kb on - strand, within fadA at 23.601 kb on + strand, within fadA at 23.673 kb on - strand, within fadA at 23.712 kb on - strand, within fadA at 23.748 kb on - strand, within fadA at 23.750 kb on + strand, within fadA at 23.750 kb on + strand, within fadA at 23.758 kb on - strand, within fadA at 23.802 kb on + strand, within fadA at 23.802 kb on + strand, within fadA at 23.882 kb on + strand, within fadA at 23.930 kb on - strand, within fadA at 23.938 kb on + strand, within fadA at 23.938 kb on + strand, within fadA at 23.951 kb on + strand, within fadA at 23.963 kb on + strand, within fadA at 24.035 kb on + strand, within fadA at 24.037 kb on + strand, within fadA at 24.068 kb on - strand, within fadA at 24.105 kb on + strand, within fadA at 24.113 kb on + strand, within fadA at 24.136 kb on - strand, within fadA at 24.136 kb on - strand, within fadA at 24.268 kb on + strand, within fadA at 24.278 kb on - strand, within fadA at 24.278 kb on - strand, within fadA at 24.278 kb on - strand, within fadA at 24.281 kb on + strand, within fadA at 24.289 kb on - strand, within fadA at 24.289 kb on - strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.293 kb on + strand, within fadA at 24.299 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.301 kb on - strand, within fadA at 24.317 kb on + strand, within fadA at 24.353 kb on + strand, within fadA at 24.361 kb on + strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.361 kb on - strand at 24.415 kb on + strand at 24.423 kb on - strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.426 kb on + strand at 24.428 kb on + strand at 24.434 kb on - strand at 24.434 kb on - strand at 24.434 kb on - strand at 24.541 kb on - strand at 24.570 kb on - strand at 24.646 kb on - strand at 24.662 kb on + strand at 24.662 kb on - strand at 24.673 kb on + strand at 24.711 kb on + strand, within fadB at 24.711 kb on + strand, within fadB at 24.719 kb on - strand, within fadB at 24.719 kb on - strand, within fadB at 24.811 kb on - strand, within fadB at 24.811 kb on - strand, within fadB at 24.813 kb on + strand, within fadB at 24.813 kb on + strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.821 kb on - strand, within fadB at 24.856 kb on + strand, within fadB at 24.856 kb on + strand, within fadB at 24.866 kb on + strand, within fadB at 24.874 kb on + strand, within fadB at 24.889 kb on - strand, within fadB at 24.967 kb on + strand, within fadB at 24.967 kb on + strand, within fadB at 24.967 kb on + strand, within fadB at 24.975 kb on - strand, within fadB at 24.999 kb on - strand, within fadB at 25.207 kb on + strand, within fadB at 25.230 kb on + strand, within fadB at 25.230 kb on + strand, within fadB at 25.238 kb on - strand, within fadB at 25.256 kb on + strand, within fadB at 25.283 kb on + strand, within fadB at 25.291 kb on - strand, within fadB at 25.291 kb on - strand, within fadB at 25.291 kb on - strand, within fadB at 25.355 kb on + strand, within fadB at 25.403 kb on + strand, within fadB at 25.436 kb on - strand, within fadB
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 22,313 - -0.7 22,385 - SO0018 0.13 +0.9 22,386 + SO0018 0.13 -0.3 22,387 + SO0018 0.13 -2.5 22,394 - SO0018 0.15 +0.6 22,404 + SO0018 0.17 +1.0 22,404 + SO0018 0.17 +2.0 22,404 + SO0018 0.17 +0.1 22,404 + SO0018 0.17 +0.6 22,412 - SO0018 0.19 +0.1 22,412 - SO0018 0.19 -1.1 22,423 + SO0018 0.21 -2.7 22,576 + SO0018 0.56 +0.3 22,576 + SO0018 0.56 +2.2 22,676 + SO0018 0.79 +1.1 22,679 + SO0018 0.80 -2.8 22,679 + SO0018 0.80 -0.4 22,679 + SO0018 0.80 +0.5 22,687 - SO0018 0.82 -2.2 22,687 - SO0018 0.82 +0.2 22,687 - SO0018 0.82 -2.4 22,708 - SO0018 0.86 -3.7 22,710 + SO0018 0.87 -0.3 22,713 - SO0018 0.87 -1.9 22,808 - -0.0 23,169 - -1.6 23,282 - +1.3 23,305 + -0.5 23,305 + +1.9 23,305 + -1.2 23,313 - +0.6 23,313 - +0.4 23,313 - -0.9 23,313 - +0.7 23,313 - -3.4 23,334 + +1.2 23,340 + -1.4 23,340 + +0.1 23,342 - +0.9 23,342 - -3.2 23,347 - -2.4 23,375 - +0.6 23,381 - -0.3 23,405 + -0.7 23,423 + -0.9 23,423 + +0.5 23,428 + fadA SO0020 0.10 -1.5 23,431 - fadA SO0020 0.11 +0.2 23,431 - fadA SO0020 0.11 -0.4 23,441 - fadA SO0020 0.12 -0.7 23,472 - fadA SO0020 0.14 -4.0 23,499 - fadA SO0020 0.16 -0.5 23,501 + fadA SO0020 0.17 +0.3 23,509 - fadA SO0020 0.17 +0.4 23,509 - fadA SO0020 0.17 +1.5 23,509 - fadA SO0020 0.17 -2.9 23,509 - fadA SO0020 0.17 +0.0 23,510 - fadA SO0020 0.17 -1.1 23,520 + fadA SO0020 0.18 -0.2 23,521 + fadA SO0020 0.18 -0.6 23,521 + fadA SO0020 0.18 -2.9 23,529 - fadA SO0020 0.19 -0.8 23,529 - fadA SO0020 0.19 -2.0 23,576 - fadA SO0020 0.23 +0.5 23,592 + fadA SO0020 0.24 -0.1 23,595 - fadA SO0020 0.25 +0.4 23,600 - fadA SO0020 0.25 +0.1 23,601 + fadA SO0020 0.25 +1.7 23,673 - fadA SO0020 0.31 -2.0 23,712 - fadA SO0020 0.35 -0.0 23,748 - fadA SO0020 0.38 -0.6 23,750 + fadA SO0020 0.38 -0.4 23,750 + fadA SO0020 0.38 -0.0 23,758 - fadA SO0020 0.39 -2.0 23,802 + fadA SO0020 0.43 +1.0 23,802 + fadA SO0020 0.43 +0.7 23,882 + fadA SO0020 0.49 -2.0 23,930 - fadA SO0020 0.54 -0.9 23,938 + fadA SO0020 0.54 -2.0 23,938 + fadA SO0020 0.54 -0.3 23,951 + fadA SO0020 0.55 -4.1 23,963 + fadA SO0020 0.56 -1.7 24,035 + fadA SO0020 0.63 -1.4 24,037 + fadA SO0020 0.63 -1.5 24,068 - fadA SO0020 0.65 -0.5 24,105 + fadA SO0020 0.69 -0.3 24,113 + fadA SO0020 0.69 -0.1 24,136 - fadA SO0020 0.71 -0.7 24,136 - fadA SO0020 0.71 -2.5 24,268 + fadA SO0020 0.83 -0.3 24,278 - fadA SO0020 0.83 +1.4 24,278 - fadA SO0020 0.83 +2.5 24,278 - fadA SO0020 0.83 -1.1 24,281 + fadA SO0020 0.84 -2.2 24,289 - fadA SO0020 0.84 -0.7 24,289 - fadA SO0020 0.84 +0.6 24,293 + fadA SO0020 0.85 +0.7 24,293 + fadA SO0020 0.85 +1.4 24,293 + fadA SO0020 0.85 +1.8 24,293 + fadA SO0020 0.85 +1.8 24,299 - fadA SO0020 0.85 -0.6 24,301 - fadA SO0020 0.85 +0.3 24,301 - fadA SO0020 0.85 -2.4 24,301 - fadA SO0020 0.85 +0.5 24,301 - fadA SO0020 0.85 -2.2 24,317 + fadA SO0020 0.87 -0.6 24,353 + fadA SO0020 0.90 -2.3 24,361 + +0.9 24,361 - -1.5 24,361 - +0.1 24,361 - -0.4 24,361 - -0.8 24,415 + +0.1 24,423 - -0.3 24,426 + +1.1 24,426 + -0.5 24,426 + -2.2 24,426 + -0.1 24,426 + -0.1 24,426 + -1.7 24,428 + +0.6 24,434 - +2.5 24,434 - -1.6 24,434 - -0.5 24,541 - +0.3 24,570 - +1.5 24,646 - +0.6 24,662 + -0.8 24,662 - -1.1 24,673 + -0.9 24,711 + fadB SO0021 0.10 -1.0 24,711 + fadB SO0021 0.10 -0.8 24,719 - fadB SO0021 0.11 -0.7 24,719 - fadB SO0021 0.11 +0.5 24,811 - fadB SO0021 0.15 -0.7 24,811 - fadB SO0021 0.15 +0.9 24,813 + fadB SO0021 0.15 -0.2 24,813 + fadB SO0021 0.15 -2.7 24,821 - fadB SO0021 0.15 -1.2 24,821 - fadB SO0021 0.15 -0.8 24,821 - fadB SO0021 0.15 +1.1 24,821 - fadB SO0021 0.15 -3.0 24,821 - fadB SO0021 0.15 +1.7 24,856 + fadB SO0021 0.17 -3.3 24,856 + fadB SO0021 0.17 -1.7 24,866 + fadB SO0021 0.17 +0.3 24,874 + fadB SO0021 0.18 -1.6 24,889 - fadB SO0021 0.18 +0.3 24,967 + fadB SO0021 0.22 +4.4 24,967 + fadB SO0021 0.22 -1.8 24,967 + fadB SO0021 0.22 -4.1 24,975 - fadB SO0021 0.22 -0.5 24,999 - fadB SO0021 0.24 +1.4 25,207 + fadB SO0021 0.33 -2.5 25,230 + fadB SO0021 0.34 -1.9 25,230 + fadB SO0021 0.34 -1.7 25,238 - fadB SO0021 0.35 -0.9 25,256 + fadB SO0021 0.35 +1.1 25,283 + fadB SO0021 0.37 +0.2 25,291 - fadB SO0021 0.37 +0.4 25,291 - fadB SO0021 0.37 -1.1 25,291 - fadB SO0021 0.37 -0.4 25,355 + fadB SO0021 0.40 +0.4 25,403 + fadB SO0021 0.42 -1.6 25,436 - fadB SO0021 0.44 +1.1
Or see this region's nucleotide sequence