Strain Fitness in Shewanella oneidensis MR-1 around SO_3240

Experiment: Fumarate electron acceptor; ground control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntflgL and SO_3240 are separated by 11 nucleotidesSO_3240 and SO3239.2 overlap by 13 nucleotidesSO3239.2 and SO3239.3 are separated by 56 nucleotides SO3239: flgL - flagellar hook-associated protein FlgL (NCBI ptt file), at 3,377,772 to 3,378,983 flgL SO_3240: SO_3240 - no description, at 3,378,995 to 3,379,288 _3240 SO3239.2: SO3239.2 - hypothetical flagellar protein (NCBI ptt file), at 3,379,276 to 3,379,701 SO3239.2 SO3239.3: SO3239.3 - hypothetical flagellar hook-associated protein (NCBI ptt file), at 3,379,758 to 3,380,918 SO3239.3 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3378.165 kb on - strand, within flgLat 3378.170 kb on - strand, within flgLat 3378.626 kb on + strand, within flgLat 3378.822 kb on - strand, within flgLat 3378.846 kb on + strand, within flgLat 3378.858 kb on - strand, within flgLat 3378.889 kb on + strandat 3378.970 kb on + strandat 3378.978 kb on - strandat 3379.178 kb on + strand, within SO_3240at 3379.222 kb on + strand, within SO_3240at 3379.230 kb on - strand, within SO_3240at 3379.269 kb on + strandat 3379.455 kb on + strand, within SO3239.2at 3379.476 kb on - strand, within SO3239.2at 3379.565 kb on + strand, within SO3239.2at 3379.619 kb on + strand, within SO3239.2at 3379.619 kb on + strand, within SO3239.2at 3379.639 kb on - strand, within SO3239.2at 3379.641 kb on - strand, within SO3239.2at 3379.747 kb on - strandat 3379.756 kb on + strandat 3379.968 kb on + strand, within SO3239.3at 3379.982 kb on + strand, within SO3239.3at 3379.990 kb on - strand, within SO3239.3at 3380.021 kb on - strand, within SO3239.3at 3380.034 kb on - strand, within SO3239.3at 3380.063 kb on + strand, within SO3239.3at 3380.067 kb on + strand, within SO3239.3at 3380.134 kb on - strand, within SO3239.3at 3380.134 kb on - strand, within SO3239.3at 3380.249 kb on - strand, within SO3239.3at 3380.281 kb on + strand, within SO3239.3at 3380.282 kb on - strand, within SO3239.3

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
remove
3,378,165 - flgL SO3239 0.32 -0.0
3,378,170 - flgL SO3239 0.33 -0.8
3,378,626 + flgL SO3239 0.70 -3.0
3,378,822 - flgL SO3239 0.87 -0.4
3,378,846 + flgL SO3239 0.89 -0.5
3,378,858 - flgL SO3239 0.90 -2.7
3,378,889 + +1.8
3,378,970 + +0.5
3,378,978 - -1.0
3,379,178 + SO_3240 0.62 +3.2
3,379,222 + SO_3240 0.77 -3.6
3,379,230 - SO_3240 0.80 -4.6
3,379,269 + +0.2
3,379,455 + SO3239.2 0.42 -1.8
3,379,476 - SO3239.2 0.47 -1.8
3,379,565 + SO3239.2 0.68 -2.4
3,379,619 + SO3239.2 0.81 -2.2
3,379,619 + SO3239.2 0.81 +0.9
3,379,639 - SO3239.2 0.85 +0.2
3,379,641 - SO3239.2 0.86 +0.3
3,379,747 - +0.5
3,379,756 + -2.1
3,379,968 + SO3239.3 0.18 +1.0
3,379,982 + SO3239.3 0.19 -3.2
3,379,990 - SO3239.3 0.20 -1.8
3,380,021 - SO3239.3 0.23 -1.2
3,380,034 - SO3239.3 0.24 -0.4
3,380,063 + SO3239.3 0.26 -2.4
3,380,067 + SO3239.3 0.27 -0.4
3,380,134 - SO3239.3 0.32 -0.7
3,380,134 - SO3239.3 0.32 +0.9
3,380,249 - SO3239.3 0.42 -0.8
3,380,281 + SO3239.3 0.45 -0.9
3,380,282 - SO3239.3 0.45 -0.9

Or see this region's nucleotide sequence