Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1466 and SO_1467 are separated by 461 nucleotides SO_1467 and SO1468 are separated by 8 nucleotides
SO1466: SO1466 - hypothetical protein (NCBI ptt file), at 1,531,264 to 1,532,100
SO1466
SO_1467: SO_1467 - no description, at 1,532,562 to 1,533,014
_1467
SO1468: SO1468 - conserved hypothetical protein (NCBI ptt file), at 1,533,023 to 1,534,084
SO1468
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1531.577 kb on - strand, within SO1466 at 1531.591 kb on + strand, within SO1466 at 1531.591 kb on + strand, within SO1466 at 1531.704 kb on - strand, within SO1466 at 1531.712 kb on + strand, within SO1466 at 1531.750 kb on + strand, within SO1466 at 1531.751 kb on + strand, within SO1466 at 1531.758 kb on - strand, within SO1466 at 1531.759 kb on - strand, within SO1466 at 1531.768 kb on + strand, within SO1466 at 1531.797 kb on + strand, within SO1466 at 1531.883 kb on - strand, within SO1466 at 1531.960 kb on - strand, within SO1466 at 1531.960 kb on - strand, within SO1466 at 1532.010 kb on - strand, within SO1466 at 1532.054 kb on + strand at 1532.060 kb on + strand at 1532.068 kb on - strand at 1532.078 kb on - strand at 1532.113 kb on - strand at 1532.113 kb on - strand at 1532.115 kb on + strand at 1532.199 kb on - strand at 1532.203 kb on + strand at 1532.203 kb on + strand at 1532.243 kb on + strand at 1532.253 kb on + strand at 1532.253 kb on + strand at 1532.261 kb on - strand at 1532.282 kb on + strand at 1532.341 kb on + strand at 1532.367 kb on - strand at 1532.455 kb on - strand at 1532.660 kb on + strand, within SO_1467 at 1532.810 kb on - strand, within SO_1467 at 1532.940 kb on + strand, within SO_1467 at 1532.972 kb on + strand at 1532.972 kb on + strand at 1532.972 kb on + strand at 1532.972 kb on + strand at 1532.972 kb on + strand at 1532.972 kb on + strand at 1532.977 kb on + strand at 1532.980 kb on - strand at 1532.980 kb on - strand at 1532.985 kb on - strand at 1533.009 kb on + strand at 1533.010 kb on + strand at 1533.056 kb on + strand at 1533.082 kb on + strand at 1533.090 kb on + strand at 1533.090 kb on + strand at 1533.098 kb on - strand at 1533.098 kb on - strand at 1533.098 kb on - strand at 1533.103 kb on - strand at 1533.109 kb on + strand at 1533.111 kb on - strand at 1533.112 kb on - strand at 1533.148 kb on + strand, within SO1468 at 1533.305 kb on + strand, within SO1468 at 1533.324 kb on - strand, within SO1468 at 1533.324 kb on - strand, within SO1468 at 1533.365 kb on + strand, within SO1468 at 1533.365 kb on + strand, within SO1468 at 1533.365 kb on + strand, within SO1468 at 1533.370 kb on + strand, within SO1468 at 1533.404 kb on - strand, within SO1468 at 1533.404 kb on - strand, within SO1468 at 1533.404 kb on - strand, within SO1468 at 1533.404 kb on - strand, within SO1468 at 1533.421 kb on + strand, within SO1468 at 1533.483 kb on + strand, within SO1468 at 1533.483 kb on + strand, within SO1468 at 1533.490 kb on + strand, within SO1468 at 1533.491 kb on - strand, within SO1468 at 1533.675 kb on + strand, within SO1468 at 1533.690 kb on - strand, within SO1468 at 1533.692 kb on + strand, within SO1468 at 1533.700 kb on - strand, within SO1468 at 1533.700 kb on - strand, within SO1468 at 1533.718 kb on + strand, within SO1468 at 1533.829 kb on + strand, within SO1468 at 1533.829 kb on + strand, within SO1468 at 1533.883 kb on - strand, within SO1468 at 1533.937 kb on + strand, within SO1468 at 1533.942 kb on + strand, within SO1468 at 1533.950 kb on - strand, within SO1468
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 1,531,577 - SO1466 0.37 +1.5 1,531,591 + SO1466 0.39 -0.1 1,531,591 + SO1466 0.39 -2.6 1,531,704 - SO1466 0.53 -2.9 1,531,712 + SO1466 0.54 +0.9 1,531,750 + SO1466 0.58 +1.2 1,531,751 + SO1466 0.58 -2.7 1,531,758 - SO1466 0.59 +1.8 1,531,759 - SO1466 0.59 +1.0 1,531,768 + SO1466 0.60 -0.8 1,531,797 + SO1466 0.64 -2.8 1,531,883 - SO1466 0.74 +1.9 1,531,960 - SO1466 0.83 -3.4 1,531,960 - SO1466 0.83 -1.1 1,532,010 - SO1466 0.89 +0.0 1,532,054 + -0.8 1,532,060 + -2.8 1,532,068 - -0.2 1,532,078 - -0.8 1,532,113 - -2.6 1,532,113 - +0.1 1,532,115 + +1.8 1,532,199 - +0.2 1,532,203 + +0.1 1,532,203 + +0.6 1,532,243 + +1.0 1,532,253 + -0.7 1,532,253 + +1.1 1,532,261 - -0.7 1,532,282 + -0.6 1,532,341 + -0.0 1,532,367 - -0.1 1,532,455 - +0.5 1,532,660 + SO_1467 0.22 -1.9 1,532,810 - SO_1467 0.55 -1.3 1,532,940 + SO_1467 0.83 -1.0 1,532,972 + -1.7 1,532,972 + -0.5 1,532,972 + +2.6 1,532,972 + +2.0 1,532,972 + +0.7 1,532,972 + +0.1 1,532,977 + -3.1 1,532,980 - +2.3 1,532,980 - -2.1 1,532,985 - +3.8 1,533,009 + +1.0 1,533,010 + -1.9 1,533,056 + -1.9 1,533,082 + -0.9 1,533,090 + +0.5 1,533,090 + +0.2 1,533,098 - +1.8 1,533,098 - -0.9 1,533,098 - -0.4 1,533,103 - -0.7 1,533,109 + -0.9 1,533,111 - -0.7 1,533,112 - -0.9 1,533,148 + SO1468 0.12 -0.3 1,533,305 + SO1468 0.27 +0.6 1,533,324 - SO1468 0.28 -1.1 1,533,324 - SO1468 0.28 -1.8 1,533,365 + SO1468 0.32 +1.7 1,533,365 + SO1468 0.32 +1.2 1,533,365 + SO1468 0.32 +1.0 1,533,370 + SO1468 0.33 +1.1 1,533,404 - SO1468 0.36 -0.6 1,533,404 - SO1468 0.36 +0.2 1,533,404 - SO1468 0.36 +0.7 1,533,404 - SO1468 0.36 +2.3 1,533,421 + SO1468 0.37 -2.7 1,533,483 + SO1468 0.43 +0.9 1,533,483 + SO1468 0.43 -0.4 1,533,490 + SO1468 0.44 -1.1 1,533,491 - SO1468 0.44 -0.4 1,533,675 + SO1468 0.61 -0.6 1,533,690 - SO1468 0.63 -0.3 1,533,692 + SO1468 0.63 -0.1 1,533,700 - SO1468 0.64 -2.5 1,533,700 - SO1468 0.64 -1.1 1,533,718 + SO1468 0.65 -0.9 1,533,829 + SO1468 0.76 -0.4 1,533,829 + SO1468 0.76 +0.4 1,533,883 - SO1468 0.81 -0.4 1,533,937 + SO1468 0.86 +1.0 1,533,942 + SO1468 0.87 +0.2 1,533,950 - SO1468 0.87 +1.2
Or see this region's nucleotide sequence