Strain Fitness in Shewanella oneidensis MR-1 around SO_1467

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1466 and SO_1467 are separated by 461 nucleotidesSO_1467 and SO1468 are separated by 8 nucleotides SO1466: SO1466 - hypothetical protein (NCBI ptt file), at 1,531,264 to 1,532,100 SO1466 SO_1467: SO_1467 - no description, at 1,532,562 to 1,533,014 _1467 SO1468: SO1468 - conserved hypothetical protein (NCBI ptt file), at 1,533,023 to 1,534,084 SO1468 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1531.577 kb on - strand, within SO1466at 1531.591 kb on + strand, within SO1466at 1531.591 kb on + strand, within SO1466at 1531.704 kb on - strand, within SO1466at 1531.712 kb on + strand, within SO1466at 1531.750 kb on + strand, within SO1466at 1531.751 kb on + strand, within SO1466at 1531.758 kb on - strand, within SO1466at 1531.759 kb on - strand, within SO1466at 1531.768 kb on + strand, within SO1466at 1531.797 kb on + strand, within SO1466at 1531.883 kb on - strand, within SO1466at 1531.960 kb on - strand, within SO1466at 1531.960 kb on - strand, within SO1466at 1532.010 kb on - strand, within SO1466at 1532.054 kb on + strandat 1532.060 kb on + strandat 1532.068 kb on - strandat 1532.078 kb on - strandat 1532.113 kb on - strandat 1532.113 kb on - strandat 1532.115 kb on + strandat 1532.199 kb on - strandat 1532.203 kb on + strandat 1532.203 kb on + strandat 1532.243 kb on + strandat 1532.253 kb on + strandat 1532.253 kb on + strandat 1532.261 kb on - strandat 1532.282 kb on + strandat 1532.341 kb on + strandat 1532.367 kb on - strandat 1532.455 kb on - strandat 1532.660 kb on + strand, within SO_1467at 1532.810 kb on - strand, within SO_1467at 1532.940 kb on + strand, within SO_1467at 1532.972 kb on + strandat 1532.972 kb on + strandat 1532.972 kb on + strandat 1532.972 kb on + strandat 1532.972 kb on + strandat 1532.972 kb on + strandat 1532.977 kb on + strandat 1532.980 kb on - strandat 1532.980 kb on - strandat 1532.985 kb on - strandat 1533.009 kb on + strandat 1533.010 kb on + strandat 1533.056 kb on + strandat 1533.082 kb on + strandat 1533.090 kb on + strandat 1533.090 kb on + strandat 1533.098 kb on - strandat 1533.098 kb on - strandat 1533.098 kb on - strandat 1533.103 kb on - strandat 1533.109 kb on + strandat 1533.111 kb on - strandat 1533.112 kb on - strandat 1533.148 kb on + strand, within SO1468at 1533.305 kb on + strand, within SO1468at 1533.324 kb on - strand, within SO1468at 1533.324 kb on - strand, within SO1468at 1533.365 kb on + strand, within SO1468at 1533.365 kb on + strand, within SO1468at 1533.365 kb on + strand, within SO1468at 1533.370 kb on + strand, within SO1468at 1533.404 kb on - strand, within SO1468at 1533.404 kb on - strand, within SO1468at 1533.404 kb on - strand, within SO1468at 1533.404 kb on - strand, within SO1468at 1533.421 kb on + strand, within SO1468at 1533.483 kb on + strand, within SO1468at 1533.483 kb on + strand, within SO1468at 1533.490 kb on + strand, within SO1468at 1533.491 kb on - strand, within SO1468at 1533.675 kb on + strand, within SO1468at 1533.690 kb on - strand, within SO1468at 1533.692 kb on + strand, within SO1468at 1533.700 kb on - strand, within SO1468at 1533.700 kb on - strand, within SO1468at 1533.718 kb on + strand, within SO1468at 1533.829 kb on + strand, within SO1468at 1533.829 kb on + strand, within SO1468at 1533.883 kb on - strand, within SO1468at 1533.937 kb on + strand, within SO1468at 1533.942 kb on + strand, within SO1468at 1533.950 kb on - strand, within SO1468

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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1,531,577 - SO1466 0.37 +1.5
1,531,591 + SO1466 0.39 -0.1
1,531,591 + SO1466 0.39 -2.6
1,531,704 - SO1466 0.53 -2.9
1,531,712 + SO1466 0.54 +0.9
1,531,750 + SO1466 0.58 +1.2
1,531,751 + SO1466 0.58 -2.7
1,531,758 - SO1466 0.59 +1.8
1,531,759 - SO1466 0.59 +1.0
1,531,768 + SO1466 0.60 -0.8
1,531,797 + SO1466 0.64 -2.8
1,531,883 - SO1466 0.74 +1.9
1,531,960 - SO1466 0.83 -3.4
1,531,960 - SO1466 0.83 -1.1
1,532,010 - SO1466 0.89 +0.0
1,532,054 + -0.8
1,532,060 + -2.8
1,532,068 - -0.2
1,532,078 - -0.8
1,532,113 - -2.6
1,532,113 - +0.1
1,532,115 + +1.8
1,532,199 - +0.2
1,532,203 + +0.1
1,532,203 + +0.6
1,532,243 + +1.0
1,532,253 + -0.7
1,532,253 + +1.1
1,532,261 - -0.7
1,532,282 + -0.6
1,532,341 + -0.0
1,532,367 - -0.1
1,532,455 - +0.5
1,532,660 + SO_1467 0.22 -1.9
1,532,810 - SO_1467 0.55 -1.3
1,532,940 + SO_1467 0.83 -1.0
1,532,972 + -1.7
1,532,972 + -0.5
1,532,972 + +2.6
1,532,972 + +2.0
1,532,972 + +0.7
1,532,972 + +0.1
1,532,977 + -3.1
1,532,980 - +2.3
1,532,980 - -2.1
1,532,985 - +3.8
1,533,009 + +1.0
1,533,010 + -1.9
1,533,056 + -1.9
1,533,082 + -0.9
1,533,090 + +0.5
1,533,090 + +0.2
1,533,098 - +1.8
1,533,098 - -0.9
1,533,098 - -0.4
1,533,103 - -0.7
1,533,109 + -0.9
1,533,111 - -0.7
1,533,112 - -0.9
1,533,148 + SO1468 0.12 -0.3
1,533,305 + SO1468 0.27 +0.6
1,533,324 - SO1468 0.28 -1.1
1,533,324 - SO1468 0.28 -1.8
1,533,365 + SO1468 0.32 +1.7
1,533,365 + SO1468 0.32 +1.2
1,533,365 + SO1468 0.32 +1.0
1,533,370 + SO1468 0.33 +1.1
1,533,404 - SO1468 0.36 -0.6
1,533,404 - SO1468 0.36 +0.2
1,533,404 - SO1468 0.36 +0.7
1,533,404 - SO1468 0.36 +2.3
1,533,421 + SO1468 0.37 -2.7
1,533,483 + SO1468 0.43 +0.9
1,533,483 + SO1468 0.43 -0.4
1,533,490 + SO1468 0.44 -1.1
1,533,491 - SO1468 0.44 -0.4
1,533,675 + SO1468 0.61 -0.6
1,533,690 - SO1468 0.63 -0.3
1,533,692 + SO1468 0.63 -0.1
1,533,700 - SO1468 0.64 -2.5
1,533,700 - SO1468 0.64 -1.1
1,533,718 + SO1468 0.65 -0.9
1,533,829 + SO1468 0.76 -0.4
1,533,829 + SO1468 0.76 +0.4
1,533,883 - SO1468 0.81 -0.4
1,533,937 + SO1468 0.86 +1.0
1,533,942 + SO1468 0.87 +0.2
1,533,950 - SO1468 0.87 +1.2

Or see this region's nucleotide sequence