Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21180

Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21170 and BWI76_RS21175 are separated by 120 nucleotidesBWI76_RS21175 and BWI76_RS21180 are separated by 54 nucleotidesBWI76_RS21180 and BWI76_RS21185 overlap by 10 nucleotidesBWI76_RS21185 and BWI76_RS21190 are separated by 124 nucleotides BWI76_RS21170: BWI76_RS21170 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 4,432,173 to 4,432,904 _RS21170 BWI76_RS21175: BWI76_RS21175 - inositol monophosphatase, at 4,433,025 to 4,433,828 _RS21175 BWI76_RS21180: BWI76_RS21180 - nickel transporter, at 4,433,883 to 4,434,863 _RS21180 BWI76_RS21185: BWI76_RS21185 - hypothetical protein, at 4,434,854 to 4,435,492 _RS21185 BWI76_RS21190: BWI76_RS21190 - stationary phase inducible protein CsiE, at 4,435,617 to 4,436,894 _RS21190 Position (kb) 4433 4434 4435Strain fitness (log2 ratio) -1 0 1 2at 4434.142 kb on + strand, within BWI76_RS21180at 4434.207 kb on + strand, within BWI76_RS21180at 4434.213 kb on - strand, within BWI76_RS21180at 4434.461 kb on + strand, within BWI76_RS21180at 4434.484 kb on - strand, within BWI76_RS21180at 4434.484 kb on - strand, within BWI76_RS21180at 4434.509 kb on - strand, within BWI76_RS21180at 4434.588 kb on + strand, within BWI76_RS21180at 4434.706 kb on - strand, within BWI76_RS21180at 4434.898 kb on + strandat 4435.053 kb on + strand, within BWI76_RS21185at 4435.066 kb on + strand, within BWI76_RS21185at 4435.126 kb on + strand, within BWI76_RS21185at 4435.134 kb on - strand, within BWI76_RS21185at 4435.141 kb on - strand, within BWI76_RS21185at 4435.311 kb on + strand, within BWI76_RS21185at 4435.329 kb on - strand, within BWI76_RS21185at 4435.493 kb on - strandat 4435.677 kb on + strandat 4435.747 kb on - strand, within BWI76_RS21190at 4435.758 kb on + strand, within BWI76_RS21190

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
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4,434,142 + BWI76_RS21180 0.26 -0.0
4,434,207 + BWI76_RS21180 0.33 -0.1
4,434,213 - BWI76_RS21180 0.34 +1.2
4,434,461 + BWI76_RS21180 0.59 +0.4
4,434,484 - BWI76_RS21180 0.61 +0.7
4,434,484 - BWI76_RS21180 0.61 -0.5
4,434,509 - BWI76_RS21180 0.64 +1.9
4,434,588 + BWI76_RS21180 0.72 -1.3
4,434,706 - BWI76_RS21180 0.84 +0.1
4,434,898 + -1.2
4,435,053 + BWI76_RS21185 0.31 +0.8
4,435,066 + BWI76_RS21185 0.33 -0.1
4,435,126 + BWI76_RS21185 0.43 +1.6
4,435,134 - BWI76_RS21185 0.44 +0.5
4,435,141 - BWI76_RS21185 0.45 -1.3
4,435,311 + BWI76_RS21185 0.72 +0.3
4,435,329 - BWI76_RS21185 0.74 +0.4
4,435,493 - -0.3
4,435,677 + +0.1
4,435,747 - BWI76_RS21190 0.10 -0.5
4,435,758 + BWI76_RS21190 0.11 +1.5

Or see this region's nucleotide sequence