Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18215 and BWI76_RS18220 are separated by 4 nucleotides BWI76_RS18220 and BWI76_RS18225 are separated by 362 nucleotides BWI76_RS18225 and BWI76_RS18230 are separated by 28 nucleotides
BWI76_RS18215: BWI76_RS18215 - putative cytoplasmic protein, at 3,784,143 to 3,785,282
_RS18215
BWI76_RS18220: BWI76_RS18220 - MFS transporter, at 3,785,287 to 3,786,870
_RS18220
BWI76_RS18225: BWI76_RS18225 - universal stress protein C, at 3,787,233 to 3,787,661
_RS18225
BWI76_RS18230: BWI76_RS18230 - trehalose-6-phosphate synthase, at 3,787,690 to 3,789,114
_RS18230
Position (kb)
3785
3786
3787 Strain fitness (log2 ratio)
-2
-1
0
1 at 3784.331 kb on + strand, within BWI76_RS18215 at 3784.538 kb on - strand, within BWI76_RS18215 at 3784.608 kb on - strand, within BWI76_RS18215 at 3784.827 kb on - strand, within BWI76_RS18215 at 3784.871 kb on + strand, within BWI76_RS18215 at 3784.901 kb on - strand, within BWI76_RS18215 at 3785.072 kb on + strand, within BWI76_RS18215 at 3785.098 kb on - strand, within BWI76_RS18215 at 3785.100 kb on + strand, within BWI76_RS18215 at 3785.170 kb on + strand at 3785.257 kb on - strand at 3785.257 kb on - strand at 3785.267 kb on - strand at 3785.446 kb on - strand, within BWI76_RS18220 at 3785.549 kb on + strand, within BWI76_RS18220 at 3785.562 kb on - strand, within BWI76_RS18220 at 3785.691 kb on - strand, within BWI76_RS18220 at 3785.776 kb on + strand, within BWI76_RS18220 at 3785.783 kb on - strand, within BWI76_RS18220 at 3785.873 kb on + strand, within BWI76_RS18220 at 3785.873 kb on + strand, within BWI76_RS18220 at 3785.878 kb on + strand, within BWI76_RS18220 at 3786.177 kb on + strand, within BWI76_RS18220 at 3786.241 kb on - strand, within BWI76_RS18220 at 3786.311 kb on - strand, within BWI76_RS18220 at 3786.311 kb on - strand, within BWI76_RS18220 at 3786.311 kb on - strand, within BWI76_RS18220 at 3786.403 kb on + strand, within BWI76_RS18220 at 3787.542 kb on + strand, within BWI76_RS18225 at 3787.542 kb on + strand, within BWI76_RS18225 at 3787.567 kb on + strand, within BWI76_RS18225 at 3787.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL remove 3,784,331 + BWI76_RS18215 0.16 -0.7 3,784,538 - BWI76_RS18215 0.35 -0.7 3,784,608 - BWI76_RS18215 0.41 -2.4 3,784,827 - BWI76_RS18215 0.60 -0.0 3,784,871 + BWI76_RS18215 0.64 -0.1 3,784,901 - BWI76_RS18215 0.66 -0.1 3,785,072 + BWI76_RS18215 0.81 +0.5 3,785,098 - BWI76_RS18215 0.84 -0.0 3,785,100 + BWI76_RS18215 0.84 -1.6 3,785,170 + -0.6 3,785,257 - +0.5 3,785,257 - +0.3 3,785,267 - +0.4 3,785,446 - BWI76_RS18220 0.10 +1.0 3,785,549 + BWI76_RS18220 0.17 +0.1 3,785,562 - BWI76_RS18220 0.17 +0.6 3,785,691 - BWI76_RS18220 0.26 +0.1 3,785,776 + BWI76_RS18220 0.31 +1.2 3,785,783 - BWI76_RS18220 0.31 -0.2 3,785,873 + BWI76_RS18220 0.37 -2.4 3,785,873 + BWI76_RS18220 0.37 +1.5 3,785,878 + BWI76_RS18220 0.37 +1.1 3,786,177 + BWI76_RS18220 0.56 -0.3 3,786,241 - BWI76_RS18220 0.60 -0.5 3,786,311 - BWI76_RS18220 0.65 +1.5 3,786,311 - BWI76_RS18220 0.65 +0.4 3,786,311 - BWI76_RS18220 0.65 +0.1 3,786,403 + BWI76_RS18220 0.70 -1.9 3,787,542 + BWI76_RS18225 0.72 +1.1 3,787,542 + BWI76_RS18225 0.72 +0.3 3,787,567 + BWI76_RS18225 0.78 +1.3 3,787,672 + +0.9
Or see this region's nucleotide sequence