Experiment: Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06280 and BWI76_RS06285 are separated by 47 nucleotides BWI76_RS06285 and BWI76_RS06290 are separated by 170 nucleotides BWI76_RS06290 and BWI76_RS06295 are separated by 91 nucleotides
BWI76_RS06280: BWI76_RS06280 - hypothetical protein, at 1,322,124 to 1,323,518
_RS06280
BWI76_RS06285: BWI76_RS06285 - peroxiredoxin, at 1,323,566 to 1,324,168
_RS06285
BWI76_RS06290: BWI76_RS06290 - ACP phosphodiesterase, at 1,324,339 to 1,324,920
_RS06290
BWI76_RS06295: BWI76_RS06295 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,325,012 to 1,326,082
_RS06295
Position (kb)
1324
1325 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1323.360 kb on - strand, within BWI76_RS06280 at 1323.399 kb on + strand at 1323.696 kb on + strand, within BWI76_RS06285 at 1323.804 kb on - strand, within BWI76_RS06285 at 1323.832 kb on - strand, within BWI76_RS06285 at 1323.898 kb on + strand, within BWI76_RS06285 at 1323.906 kb on + strand, within BWI76_RS06285 at 1324.017 kb on - strand, within BWI76_RS06285 at 1324.044 kb on + strand, within BWI76_RS06285 at 1324.237 kb on - strand at 1324.530 kb on + strand, within BWI76_RS06290 at 1325.098 kb on + strand at 1325.367 kb on + strand, within BWI76_RS06295 at 1325.389 kb on + strand, within BWI76_RS06295 at 1325.503 kb on + strand, within BWI76_RS06295 at 1325.563 kb on - strand, within BWI76_RS06295 at 1325.675 kb on - strand, within BWI76_RS06295 at 1325.827 kb on + strand, within BWI76_RS06295 at 1325.907 kb on + strand, within BWI76_RS06295
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL remove 1,323,360 - BWI76_RS06280 0.89 +0.1 1,323,399 + +0.9 1,323,696 + BWI76_RS06285 0.22 -2.2 1,323,804 - BWI76_RS06285 0.39 +0.2 1,323,832 - BWI76_RS06285 0.44 -0.4 1,323,898 + BWI76_RS06285 0.55 -0.6 1,323,906 + BWI76_RS06285 0.56 +0.7 1,324,017 - BWI76_RS06285 0.75 +0.7 1,324,044 + BWI76_RS06285 0.79 -0.9 1,324,237 - -1.6 1,324,530 + BWI76_RS06290 0.33 -2.1 1,325,098 + +0.2 1,325,367 + BWI76_RS06295 0.33 -1.7 1,325,389 + BWI76_RS06295 0.35 -0.1 1,325,503 + BWI76_RS06295 0.46 -3.0 1,325,563 - BWI76_RS06295 0.51 +1.2 1,325,675 - BWI76_RS06295 0.62 +0.4 1,325,827 + BWI76_RS06295 0.76 -0.5 1,325,907 + BWI76_RS06295 0.84 -0.0
Or see this region's nucleotide sequence