Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3460 and SO3461 are separated by 274 nucleotides SO3461 and recN are separated by 129 nucleotides
SO3460: SO3460 - transcriptional regulator, LysR family (NCBI ptt file), at 3,605,715 to 3,606,614
SO3460
SO3461: SO3461 - Fatty acid transporter (from data) , at 3,606,889 to 3,607,848
SO3461
SO3462: recN - DNA repair protein RecN (NCBI ptt file), at 3,607,978 to 3,609,636
recN
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3605.971 kb on - strand, within SO3460 at 3605.995 kb on + strand, within SO3460 at 3606.003 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.080 kb on - strand, within SO3460 at 3606.131 kb on + strand, within SO3460 at 3606.131 kb on + strand, within SO3460 at 3606.139 kb on - strand, within SO3460 at 3606.149 kb on + strand, within SO3460 at 3606.254 kb on - strand, within SO3460 at 3606.341 kb on - strand, within SO3460 at 3606.416 kb on - strand, within SO3460 at 3606.491 kb on + strand, within SO3460 at 3606.499 kb on - strand, within SO3460 at 3606.499 kb on - strand, within SO3460 at 3606.503 kb on + strand, within SO3460 at 3606.535 kb on - strand at 3606.646 kb on - strand at 3606.735 kb on - strand at 3606.735 kb on - strand at 3607.026 kb on + strand, within SO3461 at 3607.240 kb on - strand, within SO3461 at 3607.409 kb on + strand, within SO3461 at 3607.498 kb on - strand, within SO3461 at 3607.498 kb on - strand, within SO3461 at 3607.539 kb on - strand, within SO3461 at 3607.688 kb on + strand, within SO3461 at 3607.696 kb on - strand, within SO3461 at 3607.696 kb on - strand, within SO3461 at 3607.748 kb on - strand, within SO3461 at 3607.756 kb on + strand at 3607.764 kb on - strand at 3608.047 kb on - strand at 3608.099 kb on + strand at 3608.099 kb on + strand at 3608.107 kb on - strand at 3608.107 kb on - strand at 3608.107 kb on - strand at 3608.107 kb on - strand at 3608.107 kb on - strand at 3608.107 kb on - strand at 3608.208 kb on + strand, within recN at 3608.307 kb on + strand, within recN at 3608.314 kb on + strand, within recN at 3608.322 kb on - strand, within recN at 3608.383 kb on + strand, within recN at 3608.450 kb on - strand, within recN at 3608.489 kb on - strand, within recN at 3608.646 kb on + strand, within recN at 3608.655 kb on - strand, within recN at 3608.721 kb on + strand, within recN at 3608.750 kb on + strand, within recN at 3608.764 kb on - strand, within recN
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 3,605,971 - SO3460 0.28 +0.2 3,605,995 + SO3460 0.31 +0.5 3,606,003 - SO3460 0.32 -0.1 3,606,080 - SO3460 0.41 +0.2 3,606,080 - SO3460 0.41 -0.3 3,606,080 - SO3460 0.41 +0.9 3,606,131 + SO3460 0.46 -0.3 3,606,131 + SO3460 0.46 +0.0 3,606,139 - SO3460 0.47 -0.7 3,606,149 + SO3460 0.48 +0.8 3,606,254 - SO3460 0.60 -1.5 3,606,341 - SO3460 0.70 +1.6 3,606,416 - SO3460 0.78 +0.1 3,606,491 + SO3460 0.86 -1.9 3,606,499 - SO3460 0.87 +1.2 3,606,499 - SO3460 0.87 -0.1 3,606,503 + SO3460 0.88 +0.6 3,606,535 - -0.9 3,606,646 - +0.1 3,606,735 - -1.2 3,606,735 - +0.7 3,607,026 + SO3461 0.14 +0.2 3,607,240 - SO3461 0.37 +1.0 3,607,409 + SO3461 0.54 +0.3 3,607,498 - SO3461 0.63 +3.2 3,607,498 - SO3461 0.63 +0.2 3,607,539 - SO3461 0.68 +0.7 3,607,688 + SO3461 0.83 +1.2 3,607,696 - SO3461 0.84 +0.3 3,607,696 - SO3461 0.84 -0.2 3,607,748 - SO3461 0.89 +2.3 3,607,756 + -0.2 3,607,764 - -1.6 3,608,047 - -0.8 3,608,099 + -1.2 3,608,099 + -0.6 3,608,107 - -0.3 3,608,107 - -1.8 3,608,107 - -0.6 3,608,107 - +1.7 3,608,107 - +0.4 3,608,107 - +0.8 3,608,208 + recN SO3462 0.14 +0.2 3,608,307 + recN SO3462 0.20 +0.5 3,608,314 + recN SO3462 0.20 -0.9 3,608,322 - recN SO3462 0.21 -2.0 3,608,383 + recN SO3462 0.24 -1.3 3,608,450 - recN SO3462 0.28 -0.5 3,608,489 - recN SO3462 0.31 +0.6 3,608,646 + recN SO3462 0.40 -0.1 3,608,655 - recN SO3462 0.41 +0.2 3,608,721 + recN SO3462 0.45 -1.3 3,608,750 + recN SO3462 0.47 +0.2 3,608,764 - recN SO3462 0.47 +0.7
Or see this region's nucleotide sequence