Strain Fitness in Shewanella oneidensis MR-1 around SO3319

Experiment: Fumarate electron acceptor; ground control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3318 and SO3319 are separated by 162 nucleotidesSO3319 and SO3320 are separated by 10 nucleotidesSO3320 and SO3321 overlap by 68 nucleotides SO3318: SO3318 - transcriptional regulator, LysR family (NCBI ptt file), at 3,471,164 to 3,472,057 SO3318 SO3319: SO3319 - conserved hypothetical protein (NCBI ptt file), at 3,472,220 to 3,472,663 SO3319 SO3320: SO3320 - conserved hypothetical protein (NCBI ptt file), at 3,472,674 to 3,473,195 SO3320 SO3321: SO3321 - ISSod11, transposase (NCBI ptt file), at 3,473,128 to 3,474,084 SO3321 Position (kb) 3472 3473Strain fitness (log2 ratio) -2 -1 0 1 2at 3471.236 kb on - strandat 3471.343 kb on + strand, within SO3318at 3471.352 kb on - strand, within SO3318at 3471.363 kb on + strand, within SO3318at 3471.423 kb on + strand, within SO3318at 3471.433 kb on + strand, within SO3318at 3471.638 kb on - strand, within SO3318at 3471.676 kb on + strand, within SO3318at 3471.745 kb on + strand, within SO3318at 3471.764 kb on + strand, within SO3318at 3471.764 kb on + strand, within SO3318at 3471.764 kb on + strand, within SO3318at 3471.772 kb on - strand, within SO3318at 3471.772 kb on - strand, within SO3318at 3471.843 kb on + strand, within SO3318at 3471.867 kb on + strand, within SO3318at 3471.940 kb on - strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.942 kb on + strand, within SO3318at 3471.950 kb on - strand, within SO3318at 3471.950 kb on - strand, within SO3318at 3471.950 kb on - strand, within SO3318at 3471.950 kb on - strand, within SO3318at 3471.955 kb on - strand, within SO3318at 3471.976 kb on - strandat 3472.024 kb on + strandat 3472.024 kb on + strandat 3472.032 kb on - strandat 3472.032 kb on - strandat 3472.032 kb on - strandat 3472.032 kb on - strandat 3472.032 kb on - strandat 3472.040 kb on + strandat 3472.041 kb on - strandat 3472.126 kb on + strandat 3472.215 kb on + strandat 3472.268 kb on - strand, within SO3319at 3472.349 kb on + strand, within SO3319at 3472.350 kb on + strand, within SO3319at 3472.401 kb on + strand, within SO3319at 3472.401 kb on + strand, within SO3319at 3472.401 kb on + strand, within SO3319at 3472.474 kb on + strand, within SO3319at 3472.474 kb on + strand, within SO3319at 3472.482 kb on - strand, within SO3319at 3472.495 kb on - strand, within SO3319at 3472.585 kb on - strand, within SO3319at 3472.605 kb on - strand, within SO3319at 3472.627 kb on - strandat 3472.642 kb on + strandat 3472.673 kb on - strandat 3472.692 kb on + strandat 3472.692 kb on + strandat 3472.713 kb on + strandat 3472.713 kb on + strandat 3472.767 kb on - strand, within SO3320at 3472.772 kb on + strand, within SO3320at 3472.772 kb on + strand, within SO3320at 3472.780 kb on - strand, within SO3320at 3472.780 kb on - strand, within SO3320at 3472.999 kb on - strand, within SO3320

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control
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3,471,236 - +1.0
3,471,343 + SO3318 0.20 -0.7
3,471,352 - SO3318 0.21 -0.0
3,471,363 + SO3318 0.22 -0.6
3,471,423 + SO3318 0.29 +1.3
3,471,433 + SO3318 0.30 -0.4
3,471,638 - SO3318 0.53 -0.5
3,471,676 + SO3318 0.57 +0.8
3,471,745 + SO3318 0.65 +0.1
3,471,764 + SO3318 0.67 -0.0
3,471,764 + SO3318 0.67 -1.2
3,471,764 + SO3318 0.67 +0.2
3,471,772 - SO3318 0.68 -0.8
3,471,772 - SO3318 0.68 -1.0
3,471,843 + SO3318 0.76 +0.6
3,471,867 + SO3318 0.79 +0.8
3,471,940 - SO3318 0.87 +0.2
3,471,942 + SO3318 0.87 -0.1
3,471,942 + SO3318 0.87 +0.6
3,471,942 + SO3318 0.87 +1.2
3,471,942 + SO3318 0.87 -0.3
3,471,942 + SO3318 0.87 +0.7
3,471,942 + SO3318 0.87 -1.3
3,471,942 + SO3318 0.87 -1.1
3,471,942 + SO3318 0.87 +0.1
3,471,942 + SO3318 0.87 +0.4
3,471,942 + SO3318 0.87 -0.9
3,471,942 + SO3318 0.87 +0.4
3,471,942 + SO3318 0.87 -0.5
3,471,942 + SO3318 0.87 -0.4
3,471,942 + SO3318 0.87 -0.2
3,471,942 + SO3318 0.87 +0.6
3,471,942 + SO3318 0.87 +0.1
3,471,942 + SO3318 0.87 +0.4
3,471,942 + SO3318 0.87 -0.9
3,471,942 + SO3318 0.87 +0.9
3,471,942 + SO3318 0.87 -0.5
3,471,942 + SO3318 0.87 -0.1
3,471,950 - SO3318 0.88 -2.4
3,471,950 - SO3318 0.88 -0.8
3,471,950 - SO3318 0.88 +0.2
3,471,950 - SO3318 0.88 +0.1
3,471,955 - SO3318 0.88 -0.2
3,471,976 - -0.1
3,472,024 + +0.4
3,472,024 + +1.7
3,472,032 - +0.9
3,472,032 - -0.7
3,472,032 - -0.5
3,472,032 - -1.5
3,472,032 - -1.1
3,472,040 + +0.1
3,472,041 - +1.1
3,472,126 + -0.6
3,472,215 + -0.5
3,472,268 - SO3319 0.11 +0.3
3,472,349 + SO3319 0.29 -0.1
3,472,350 + SO3319 0.29 -0.0
3,472,401 + SO3319 0.41 -1.4
3,472,401 + SO3319 0.41 +1.6
3,472,401 + SO3319 0.41 -2.1
3,472,474 + SO3319 0.57 -2.2
3,472,474 + SO3319 0.57 -0.6
3,472,482 - SO3319 0.59 -0.8
3,472,495 - SO3319 0.62 +0.1
3,472,585 - SO3319 0.82 -1.7
3,472,605 - SO3319 0.87 -2.5
3,472,627 - -0.1
3,472,642 + -1.8
3,472,673 - +0.4
3,472,692 + +0.4
3,472,692 + -0.5
3,472,713 + -1.5
3,472,713 + -0.6
3,472,767 - SO3320 0.18 +1.1
3,472,772 + SO3320 0.19 -0.2
3,472,772 + SO3320 0.19 +0.3
3,472,780 - SO3320 0.20 +0.1
3,472,780 - SO3320 0.20 +2.7
3,472,999 - SO3320 0.62 -0.8

Or see this region's nucleotide sequence