Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0804 and SO0805 are separated by 79 nucleotides SO0805 and SO0806 are separated by 177 nucleotides SO0806 and hpt-1 are separated by 317 nucleotides
SO0804: SO0804 - hypothetical protein (NCBI ptt file), at 816,347 to 816,952
SO0804
SO0805: SO0805 - CBS domain protein (NCBI ptt file), at 817,032 to 817,550
SO0805
SO0806: SO0806 - alkaline phosphatase, putative (NCBI ptt file), at 817,728 to 819,494
SO0806
SO0807: hpt-1 - hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file), at 819,812 to 820,378
hpt-1
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -2
-1
0
1 at 816.814 kb on + strand, within SO0804 at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.986 kb on + strand at 816.986 kb on + strand at 816.994 kb on - strand at 817.022 kb on + strand at 817.029 kb on + strand at 817.030 kb on - strand at 817.054 kb on + strand at 817.062 kb on - strand at 817.090 kb on - strand, within SO0805 at 817.165 kb on + strand, within SO0805 at 817.167 kb on + strand, within SO0805 at 817.167 kb on + strand, within SO0805 at 817.173 kb on - strand, within SO0805 at 817.173 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.175 kb on - strand, within SO0805 at 817.178 kb on + strand, within SO0805 at 817.186 kb on - strand, within SO0805 at 817.186 kb on - strand, within SO0805 at 817.209 kb on - strand, within SO0805 at 817.284 kb on - strand, within SO0805 at 817.291 kb on - strand, within SO0805 at 817.366 kb on + strand, within SO0805 at 817.401 kb on - strand, within SO0805 at 817.427 kb on + strand, within SO0805 at 817.490 kb on - strand, within SO0805 at 817.493 kb on + strand, within SO0805 at 817.493 kb on + strand, within SO0805 at 817.501 kb on - strand at 817.529 kb on + strand at 817.537 kb on - strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.679 kb on + strand at 817.687 kb on - strand at 817.694 kb on - strand at 817.703 kb on - strand at 817.708 kb on - strand at 817.784 kb on - strand at 817.825 kb on - strand at 817.832 kb on + strand at 817.832 kb on + strand at 817.882 kb on - strand at 817.998 kb on - strand, within SO0806 at 818.029 kb on - strand, within SO0806 at 818.069 kb on - strand, within SO0806 at 818.141 kb on + strand, within SO0806 at 818.144 kb on - strand, within SO0806 at 818.144 kb on - strand, within SO0806 at 818.152 kb on - strand, within SO0806 at 818.168 kb on - strand, within SO0806 at 818.368 kb on + strand, within SO0806 at 818.381 kb on - strand, within SO0806 at 818.643 kb on - strand, within SO0806 at 818.823 kb on + strand, within SO0806 at 818.926 kb on + strand, within SO0806 at 818.975 kb on - strand, within SO0806 at 819.002 kb on - strand, within SO0806 at 819.228 kb on - strand, within SO0806 at 819.228 kb on - strand, within SO0806 at 819.267 kb on + strand, within SO0806 at 819.280 kb on - strand, within SO0806 at 819.352 kb on + strand at 819.360 kb on - strand at 819.397 kb on - strand at 819.428 kb on + strand at 819.474 kb on + strand at 819.526 kb on - strand at 819.543 kb on + strand at 819.551 kb on - strand at 819.935 kb on - strand, within hpt-1 at 819.950 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.131 kb on - strand, within hpt-1 at 820.140 kb on + strand, within hpt-1 at 820.187 kb on - strand, within hpt-1 at 820.318 kb on - strand, within hpt-1 at 820.336 kb on + strand at 820.337 kb on + strand at 820.344 kb on - strand at 820.344 kb on - strand at 820.449 kb on + strand at 820.486 kb on + strand at 820.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 816,814 + SO0804 0.77 -1.3 816,893 + -0.4 816,893 + +0.7 816,893 + -0.3 816,893 + -0.3 816,901 - -0.5 816,901 - +0.4 816,901 - -0.6 816,901 - +0.9 816,901 - -0.3 816,901 - +0.3 816,901 - +1.0 816,986 + -0.1 816,986 + -0.0 816,994 - -0.8 817,022 + +0.6 817,029 + +0.0 817,030 - -0.2 817,054 + +0.3 817,062 - +1.1 817,090 - SO0805 0.11 -1.9 817,165 + SO0805 0.26 +0.3 817,167 + SO0805 0.26 +0.0 817,167 + SO0805 0.26 -0.3 817,173 - SO0805 0.27 +0.9 817,173 - SO0805 0.27 +0.0 817,175 - SO0805 0.28 +0.2 817,175 - SO0805 0.28 +0.0 817,175 - SO0805 0.28 -0.0 817,175 - SO0805 0.28 -0.6 817,178 + SO0805 0.28 +1.1 817,186 - SO0805 0.30 +0.9 817,186 - SO0805 0.30 +0.6 817,209 - SO0805 0.34 -0.4 817,284 - SO0805 0.49 +0.0 817,291 - SO0805 0.50 +0.7 817,366 + SO0805 0.64 -0.8 817,401 - SO0805 0.71 +0.5 817,427 + SO0805 0.76 -2.0 817,490 - SO0805 0.88 +0.2 817,493 + SO0805 0.89 +0.8 817,493 + SO0805 0.89 -1.5 817,501 - +0.5 817,529 + +0.3 817,537 - -1.3 817,679 + -0.3 817,679 + -1.0 817,679 + +0.3 817,679 + -0.4 817,687 - +0.5 817,694 - +0.5 817,703 - +0.6 817,708 - +1.2 817,784 - -0.6 817,825 - -0.1 817,832 + +0.7 817,832 + +1.3 817,882 - -1.7 817,998 - SO0806 0.15 +1.1 818,029 - SO0806 0.17 -0.3 818,069 - SO0806 0.19 +1.6 818,141 + SO0806 0.23 -1.0 818,144 - SO0806 0.24 -0.6 818,144 - SO0806 0.24 -0.4 818,152 - SO0806 0.24 -0.0 818,168 - SO0806 0.25 -0.3 818,368 + SO0806 0.36 +0.5 818,381 - SO0806 0.37 -0.4 818,643 - SO0806 0.52 -1.1 818,823 + SO0806 0.62 +1.2 818,926 + SO0806 0.68 +0.1 818,975 - SO0806 0.71 -2.0 819,002 - SO0806 0.72 -0.7 819,228 - SO0806 0.85 -0.8 819,228 - SO0806 0.85 -0.9 819,267 + SO0806 0.87 -2.0 819,280 - SO0806 0.88 -0.4 819,352 + -0.7 819,360 - +1.5 819,397 - -0.1 819,428 + +1.3 819,474 + -1.0 819,526 - +0.6 819,543 + +0.5 819,551 - +0.5 819,935 - hpt-1 SO0807 0.22 -0.9 819,950 + hpt-1 SO0807 0.24 -1.0 820,066 + hpt-1 SO0807 0.45 -1.1 820,066 + hpt-1 SO0807 0.45 +0.6 820,131 - hpt-1 SO0807 0.56 +0.8 820,140 + hpt-1 SO0807 0.58 -0.2 820,187 - hpt-1 SO0807 0.66 +1.5 820,318 - hpt-1 SO0807 0.89 -1.3 820,336 + -1.3 820,337 + +0.0 820,344 - -0.4 820,344 - -0.4 820,449 + -0.5 820,486 + +0.5 820,487 + +1.1
Or see this region's nucleotide sequence