Experiment: Fumarate electron acceptor; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0545 and rimK-1 are separated by 151 nucleotides rimK-1 and SO0547 are separated by 46 nucleotides
SO0545: SO0545 - response regulator (NCBI ptt file), at 567,052 to 568,779
SO0545
SO0546: rimK-1 - ribosomal protein S6 modification protein (NCBI ptt file), at 568,931 to 569,836
rimK-1
SO0547: SO0547 - conserved hypothetical protein (NCBI ptt file), at 569,883 to 570,575
SO0547
Position (kb) 568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 567.938 kb on + strand, within SO0545 at 567.980 kb on - strand, within SO0545 at 568.022 kb on + strand, within SO0545 at 568.038 kb on + strand, within SO0545 at 568.045 kb on - strand, within SO0545 at 568.086 kb on - strand, within SO0545 at 568.196 kb on - strand, within SO0545 at 568.222 kb on - strand, within SO0545 at 568.225 kb on + strand, within SO0545 at 568.230 kb on + strand, within SO0545 at 568.230 kb on + strand, within SO0545 at 568.238 kb on - strand, within SO0545 at 568.313 kb on + strand, within SO0545 at 568.352 kb on + strand, within SO0545 at 568.352 kb on + strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.360 kb on - strand, within SO0545 at 568.436 kb on + strand, within SO0545 at 568.590 kb on - strand, within SO0545 at 568.597 kb on + strand, within SO0545 at 568.599 kb on + strand, within SO0545 at 568.616 kb on + strand at 568.810 kb on - strand at 568.810 kb on - strand at 568.810 kb on - strand at 568.837 kb on + strand at 568.837 kb on + strand at 568.837 kb on + strand at 568.850 kb on - strand at 568.855 kb on - strand at 568.860 kb on - strand at 568.860 kb on - strand at 568.871 kb on + strand at 568.916 kb on - strand at 568.916 kb on - strand at 568.916 kb on - strand at 568.966 kb on + strand at 568.974 kb on - strand at 568.986 kb on - strand at 569.229 kb on + strand, within rimK-1 at 569.261 kb on + strand, within rimK-1 at 569.267 kb on + strand, within rimK-1 at 569.361 kb on + strand, within rimK-1 at 569.364 kb on - strand, within rimK-1 at 569.373 kb on + strand, within rimK-1 at 569.507 kb on - strand, within rimK-1 at 569.572 kb on + strand, within rimK-1 at 569.607 kb on + strand, within rimK-1 at 569.615 kb on - strand, within rimK-1 at 569.686 kb on + strand, within rimK-1 at 569.703 kb on + strand, within rimK-1 at 569.947 kb on - strand at 569.962 kb on - strand, within SO0547 at 569.962 kb on - strand, within SO0547 at 569.962 kb on - strand, within SO0547 at 569.976 kb on - strand, within SO0547 at 569.986 kb on + strand, within SO0547 at 569.993 kb on + strand, within SO0547 at 570.054 kb on + strand, within SO0547 at 570.159 kb on + strand, within SO0547 at 570.246 kb on + strand, within SO0547 at 570.254 kb on - strand, within SO0547 at 570.265 kb on + strand, within SO0547 at 570.325 kb on + strand, within SO0547 at 570.447 kb on + strand, within SO0547 at 570.513 kb on + strand at 570.808 kb on - strand at 570.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate electron acceptor; ground control remove 567,938 + SO0545 0.51 +1.3 567,980 - SO0545 0.54 -0.8 568,022 + SO0545 0.56 -0.3 568,038 + SO0545 0.57 +2.7 568,045 - SO0545 0.57 -0.0 568,086 - SO0545 0.60 -1.2 568,196 - SO0545 0.66 -0.1 568,222 - SO0545 0.68 -1.6 568,225 + SO0545 0.68 +0.5 568,230 + SO0545 0.68 -2.2 568,230 + SO0545 0.68 -0.2 568,238 - SO0545 0.69 -0.4 568,313 + SO0545 0.73 -0.5 568,352 + SO0545 0.75 -1.4 568,352 + SO0545 0.75 -2.4 568,360 - SO0545 0.76 -0.4 568,360 - SO0545 0.76 -0.8 568,360 - SO0545 0.76 -0.5 568,360 - SO0545 0.76 +0.4 568,436 + SO0545 0.80 -0.5 568,590 - SO0545 0.89 +2.7 568,597 + SO0545 0.89 -0.8 568,599 + SO0545 0.90 +0.1 568,616 + +1.8 568,810 - +0.5 568,810 - +1.2 568,810 - -1.2 568,837 + -1.0 568,837 + -0.1 568,837 + -1.2 568,850 - +1.8 568,855 - -1.7 568,860 - -0.8 568,860 - +1.0 568,871 + -0.1 568,916 - -0.0 568,916 - -0.1 568,916 - -0.2 568,966 + -0.2 568,974 - -0.5 568,986 - +0.7 569,229 + rimK-1 SO0546 0.33 -0.7 569,261 + rimK-1 SO0546 0.36 +1.0 569,267 + rimK-1 SO0546 0.37 +0.1 569,361 + rimK-1 SO0546 0.47 +1.0 569,364 - rimK-1 SO0546 0.48 -1.5 569,373 + rimK-1 SO0546 0.49 -0.2 569,507 - rimK-1 SO0546 0.64 +0.2 569,572 + rimK-1 SO0546 0.71 -0.1 569,607 + rimK-1 SO0546 0.75 -0.1 569,615 - rimK-1 SO0546 0.75 -1.8 569,686 + rimK-1 SO0546 0.83 -1.1 569,703 + rimK-1 SO0546 0.85 -2.3 569,947 - +2.5 569,962 - SO0547 0.11 +0.8 569,962 - SO0547 0.11 -0.8 569,962 - SO0547 0.11 +0.8 569,976 - SO0547 0.13 +1.3 569,986 + SO0547 0.15 -0.4 569,993 + SO0547 0.16 +0.3 570,054 + SO0547 0.25 -1.4 570,159 + SO0547 0.40 -0.4 570,246 + SO0547 0.52 +0.4 570,254 - SO0547 0.54 +0.0 570,265 + SO0547 0.55 -3.2 570,325 + SO0547 0.64 -2.1 570,447 + SO0547 0.81 +0.5 570,513 + +0.0 570,808 - -2.1 570,809 - -0.2
Or see this region's nucleotide sequence