Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24725 and BWI76_RS24730 are separated by 18 nucleotides BWI76_RS24730 and BWI76_RS24735 are separated by 482 nucleotides
BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486
_RS24725
BWI76_RS24730: BWI76_RS24730 - uronate isomerase, at 5,157,505 to 5,158,917
_RS24730
BWI76_RS24735: BWI76_RS24735 - MFS transporter, at 5,159,400 to 5,160,701
_RS24735
Position (kb)
5157
5158
5159 Strain fitness (log2 ratio)
-1
0
1
2 at 5156.827 kb on - strand, within BWI76_RS24725 at 5156.901 kb on - strand, within BWI76_RS24725 at 5157.201 kb on + strand, within BWI76_RS24725 at 5157.351 kb on + strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.359 kb on - strand at 5157.417 kb on - strand at 5157.483 kb on + strand at 5157.659 kb on + strand, within BWI76_RS24730 at 5157.713 kb on + strand, within BWI76_RS24730 at 5157.903 kb on - strand, within BWI76_RS24730 at 5158.062 kb on - strand, within BWI76_RS24730 at 5158.088 kb on + strand, within BWI76_RS24730 at 5158.259 kb on + strand, within BWI76_RS24730 at 5158.353 kb on - strand, within BWI76_RS24730 at 5158.939 kb on + strand at 5159.208 kb on + strand at 5159.314 kb on - strand at 5159.474 kb on + strand at 5159.482 kb on - strand at 5159.566 kb on - strand, within BWI76_RS24735 at 5159.575 kb on + strand, within BWI76_RS24735 at 5159.585 kb on + strand, within BWI76_RS24735 at 5159.663 kb on - strand, within BWI76_RS24735
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,156,827 - BWI76_RS24725 0.56 -1.1 5,156,901 - BWI76_RS24725 0.61 +0.3 5,157,201 + BWI76_RS24725 0.81 -0.6 5,157,351 + -0.0 5,157,359 - +1.5 5,157,359 - +2.2 5,157,359 - -0.0 5,157,359 - +0.1 5,157,417 - +0.7 5,157,483 + +0.7 5,157,659 + BWI76_RS24730 0.11 +0.6 5,157,713 + BWI76_RS24730 0.15 +0.5 5,157,903 - BWI76_RS24730 0.28 +0.1 5,158,062 - BWI76_RS24730 0.39 +2.3 5,158,088 + BWI76_RS24730 0.41 -0.1 5,158,259 + BWI76_RS24730 0.53 +0.6 5,158,353 - BWI76_RS24730 0.60 -1.5 5,158,939 + +0.7 5,159,208 + -0.7 5,159,314 - +0.4 5,159,474 + -0.7 5,159,482 - -0.3 5,159,566 - BWI76_RS24735 0.13 +0.3 5,159,575 + BWI76_RS24735 0.13 -1.3 5,159,585 + BWI76_RS24735 0.14 -0.6 5,159,663 - BWI76_RS24735 0.20 +0.4
Or see this region's nucleotide sequence