Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09960 and BWI76_RS09965 are separated by 185 nucleotides BWI76_RS09965 and BWI76_RS09970 are separated by 95 nucleotides BWI76_RS09970 and BWI76_RS09975 are separated by 353 nucleotides
BWI76_RS09960: BWI76_RS09960 - Lon protease, at 2,095,731 to 2,097,488
_RS09960
BWI76_RS09965: BWI76_RS09965 - macrodomain Ter protein, at 2,097,674 to 2,098,126
_RS09965
BWI76_RS09970: BWI76_RS09970 - porin OmpA, at 2,098,222 to 2,099,292
_RS09970
BWI76_RS09975: BWI76_RS09975 - cell division inhibitor SulA, at 2,099,646 to 2,100,155
_RS09975
Position (kb)
2098
2099
2100 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2098.178 kb on - strand at 2098.290 kb on - strand at 2098.489 kb on - strand, within BWI76_RS09970 at 2098.743 kb on - strand, within BWI76_RS09970 at 2099.339 kb on - strand at 2099.339 kb on - strand at 2099.439 kb on - strand at 2099.723 kb on + strand, within BWI76_RS09975 at 2099.724 kb on + strand, within BWI76_RS09975 at 2099.725 kb on + strand, within BWI76_RS09975 at 2099.797 kb on - strand, within BWI76_RS09975 at 2099.893 kb on + strand, within BWI76_RS09975 at 2099.893 kb on + strand, within BWI76_RS09975 at 2099.901 kb on - strand, within BWI76_RS09975 at 2100.118 kb on - strand at 2100.153 kb on - strand at 2100.191 kb on + strand at 2100.206 kb on + strand at 2100.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,098,178 - -0.4 2,098,290 - -2.7 2,098,489 - BWI76_RS09970 0.25 -3.3 2,098,743 - BWI76_RS09970 0.49 +0.9 2,099,339 - -1.7 2,099,339 - -2.1 2,099,439 - -1.3 2,099,723 + BWI76_RS09975 0.15 -0.3 2,099,724 + BWI76_RS09975 0.15 -0.1 2,099,725 + BWI76_RS09975 0.15 +0.4 2,099,797 - BWI76_RS09975 0.30 +0.6 2,099,893 + BWI76_RS09975 0.48 +0.4 2,099,893 + BWI76_RS09975 0.48 +0.3 2,099,901 - BWI76_RS09975 0.50 +0.2 2,100,118 - +0.6 2,100,153 - -3.1 2,100,191 + +1.4 2,100,206 + -0.2 2,100,281 + +0.3
Or see this region's nucleotide sequence