Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07280 and BWI76_RS07285 are separated by 171 nucleotides BWI76_RS07285 and BWI76_RS07290 are separated by 211 nucleotides
BWI76_RS07280: BWI76_RS07280 - branched-chain amino acid ABC transporter permease, at 1,531,536 to 1,532,486
_RS07280
BWI76_RS07285: BWI76_RS07285 - LysR family transcriptional regulator, at 1,532,658 to 1,533,587
_RS07285
BWI76_RS07290: BWI76_RS07290 - PTS beta-glucoside transporter subunit EIIBCA, at 1,533,799 to 1,535,679
_RS07290
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1531.658 kb on - strand, within BWI76_RS07280 at 1531.974 kb on - strand, within BWI76_RS07280 at 1532.024 kb on + strand, within BWI76_RS07280 at 1532.068 kb on - strand, within BWI76_RS07280 at 1532.272 kb on + strand, within BWI76_RS07280 at 1532.340 kb on + strand, within BWI76_RS07280 at 1532.395 kb on + strand at 1532.405 kb on - strand at 1532.405 kb on - strand at 1532.410 kb on + strand at 1532.416 kb on - strand at 1532.418 kb on - strand at 1532.446 kb on + strand at 1532.477 kb on - strand at 1532.501 kb on - strand at 1532.632 kb on + strand at 1532.640 kb on - strand at 1532.819 kb on - strand, within BWI76_RS07285 at 1532.945 kb on + strand, within BWI76_RS07285 at 1532.954 kb on - strand, within BWI76_RS07285 at 1533.209 kb on + strand, within BWI76_RS07285 at 1533.407 kb on - strand, within BWI76_RS07285 at 1533.439 kb on - strand, within BWI76_RS07285 at 1533.521 kb on + strand at 1533.550 kb on - strand at 1533.550 kb on - strand at 1533.562 kb on + strand at 1533.923 kb on - strand at 1533.954 kb on - strand at 1534.011 kb on + strand, within BWI76_RS07290 at 1534.124 kb on + strand, within BWI76_RS07290 at 1534.132 kb on - strand, within BWI76_RS07290 at 1534.156 kb on + strand, within BWI76_RS07290 at 1534.289 kb on - strand, within BWI76_RS07290
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,531,658 - BWI76_RS07280 0.13 +0.3 1,531,974 - BWI76_RS07280 0.46 +0.3 1,532,024 + BWI76_RS07280 0.51 +0.7 1,532,068 - BWI76_RS07280 0.56 +1.0 1,532,272 + BWI76_RS07280 0.77 +0.6 1,532,340 + BWI76_RS07280 0.85 +0.7 1,532,395 + +0.0 1,532,405 - -0.7 1,532,405 - -1.1 1,532,410 + -0.1 1,532,416 - -0.2 1,532,418 - +0.6 1,532,446 + +0.1 1,532,477 - +1.5 1,532,501 - +0.3 1,532,632 + +0.9 1,532,640 - +0.1 1,532,819 - BWI76_RS07285 0.17 -1.0 1,532,945 + BWI76_RS07285 0.31 -0.9 1,532,954 - BWI76_RS07285 0.32 -1.4 1,533,209 + BWI76_RS07285 0.59 +0.5 1,533,407 - BWI76_RS07285 0.81 -2.7 1,533,439 - BWI76_RS07285 0.84 -1.4 1,533,521 + +0.2 1,533,550 - +0.9 1,533,550 - -0.1 1,533,562 + +0.6 1,533,923 - -0.4 1,533,954 - +0.3 1,534,011 + BWI76_RS07290 0.11 +0.4 1,534,124 + BWI76_RS07290 0.17 +0.0 1,534,132 - BWI76_RS07290 0.18 -3.1 1,534,156 + BWI76_RS07290 0.19 +0.2 1,534,289 - BWI76_RS07290 0.26 +0.4
Or see this region's nucleotide sequence