Experiment: RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06475 and BWI76_RS06480 are separated by 11 nucleotides BWI76_RS06480 and BWI76_RS06485 overlap by 1 nucleotides BWI76_RS06485 and BWI76_RS06490 overlap by 11 nucleotides
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
BWI76_RS06480: BWI76_RS06480 - cytochrome o ubiquinol oxidase subunit IV, at 1,361,436 to 1,361,765
_RS06480
BWI76_RS06485: BWI76_RS06485 - cytochrome o ubiquinol oxidase subunit III, at 1,361,765 to 1,362,376
_RS06485
BWI76_RS06490: BWI76_RS06490 - cytochrome ubiquinol oxidase subunit I, at 1,362,366 to 1,364,357
_RS06490
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-1
0
1 at 1360.842 kb on + strand, within BWI76_RS06475 at 1361.081 kb on - strand, within BWI76_RS06475 at 1361.591 kb on - strand, within BWI76_RS06480 at 1361.856 kb on - strand, within BWI76_RS06485 at 1361.946 kb on + strand, within BWI76_RS06485 at 1362.441 kb on - strand at 1362.686 kb on - strand, within BWI76_RS06490 at 1363.047 kb on + strand, within BWI76_RS06490 at 1363.073 kb on - strand, within BWI76_RS06490 at 1363.232 kb on - strand, within BWI76_RS06490
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,360,842 + BWI76_RS06475 0.34 -1.6 1,361,081 - BWI76_RS06475 0.61 -0.4 1,361,591 - BWI76_RS06480 0.47 -0.0 1,361,856 - BWI76_RS06485 0.15 -0.0 1,361,946 + BWI76_RS06485 0.30 -1.3 1,362,441 - +0.6 1,362,686 - BWI76_RS06490 0.16 -0.0 1,363,047 + BWI76_RS06490 0.34 -0.5 1,363,073 - BWI76_RS06490 0.35 +0.0 1,363,232 - BWI76_RS06490 0.43 -0.5
Or see this region's nucleotide sequence